PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00039.132
Common NameAMTR_s00039p00172240, LOC18444139
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 242aa    MW: 28029.7 Da    PI: 8.46
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00039.132genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181764148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              rg+WT+eEd+ll+++v+++G g+W++ a+ +g++R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00039.132 17 RGPWTAEEDKLLIQYVRMHGEGRWNSAAESVGLKRSGKSCRLRWVNYL 64
                                              89********************************************97 PP
2Myb_DNA-binding55.81.1e-1771114247
                                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                               g  T+eE+ l+v++++++G++ W+tIar ++ gRt++++k++w+++
  evm_27.model.AmTr_v1.0_scaffold00039.132  71 GHITPEEERLIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                                               667******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9271264IPR017930Myb domain
SMARTSM007178.8E-161666IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-3016111IPR009057Homeodomain-like
PfamPF002492.8E-181764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-241871IPR009057Homeodomain-like
CDDcd001674.66E-121964No hitNo description
PROSITE profilePS5129426.5865119IPR017930Myb domain
SMARTSM007172.4E-1669117IPR001005SANT/Myb domain
PfamPF002491.9E-1570114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2572118IPR009057Homeodomain-like
CDDcd001671.32E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MCASWGWGSL GDEVNRRGPW TAEEDKLLIQ YVRMHGEGRW NSAAESVGLK RSGKSCRLRW  60
VNYLRPDLKK GHITPEEERL IVELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKEK  120
TREIPKSRVP LQQQQLQQLQ QQKQRMSINK ILSQFGEDET KSSLPQMKPD MVWILPTCEE  180
QFLPFMFLGE STLPPEPSRE EGVWGGLWNL DDGDDVTNTY AASNIMAQNY ADHNPFGLPT  240
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271011821127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854379.10.0transcription factor MYB21
TrEMBLU5CRJ71e-180U5CRJ7_AMBTC; Uncharacterized protein
STRINGERN158460.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.19e-63myb domain protein 79
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]