PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00038.91 | ||||||||
Common Name | AMTR_s00038p00150140, LOC18442852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 575aa MW: 62605 Da PI: 6.1103 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l evm_27.model.AmTr_v1.0_scaffold00038.91 28 KGPWTSAEDAVLIEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 75 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.6e-15 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ l+++++++ G++ W++ a+ ++ gRt++++k++w++ evm_27.model.AmTr_v1.0_scaffold00038.91 81 KGAFTADEERLIIELHAKIGNK-WARMASQLP-GRTDNEIKNYWNT 124 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.424 | 23 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-30 | 27 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.75E-11 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 24.439 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-15 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-14 | 81 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.68E-10 | 83 | 124 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 83 | 129 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MGLKDRSSSP SLDESGGCGS GGGGVLKKGP WTSAEDAVLI EYVKKHGEGN WNAVQKHSGL 60 SRCGKSCRLR WANHLRPNLK KGAFTADEER LIIELHAKIG NKWARMASQL PGRTDNEIKN 120 YWNTRIKRRQ RAGLPLYPPD LHLQATGEGQ QSENIGEFTL NENHHSDFLQ SNKLDFPHVS 180 FEALKPNPET LTLPFVPPFS EAPNGGILTR SLGPHQAYTP FIPPSLVHPP KRLRGGESSL 240 LSTFPNGIIP MSPLNQFQSE NYRKNQFHVE TNEKFHRPFS LGHHPFDPDP IEKNNALLGS 300 VVTGSHALLN GTFSTSKPLC GAVKMELPSL QYQDLSDLKG WGVCPSGPPN IEAVESYIQS 360 PPSMAPPTQN ECFSPRSSGL LDALLHESHA LGSSASKSPA SSEVVGPPPR ASSVGPIAGL 420 SEHRRVNTCE EWGGFRDPIS PLGQSAAICL SESTPPLSTT SLLEEIAPAK ASPCALVKTE 480 AVEHFSDSDG EDRFMDFDRR ETSLISDWYE QSWESGKEPS GVTDAITSLL SEDFCNEYKQ 540 LSTESSASNQ AWTLGSCLWN NMPPVCQSDI LDNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-32 | 26 | 129 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00348 | DAP | Transfer from AT3G11440 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006853124.2 | 0.0 | transcription factor GAMYB | ||||
TrEMBL | U5CN70 | 0.0 | U5CN70_AMBTC; Uncharacterized protein | ||||
STRING | ERN14591 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-101 | myb domain protein 65 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00038.91 |
Entrez Gene | 18442852 |
Publications ? help Back to Top | |||
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