PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00038.125
Common NameAMTR_s00038p00183620, LOC18442889
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 340aa    MW: 38212.7 Da    PI: 5.6359
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00038.125genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.7e-191461148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+WT+eEd++lv+++k+ G g+W++ +++ g++R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00038.125 14 KGPWTPEEDQKLVNYIKKQGHGSWRALPKHAGLNRCGKSCRLRWTNYL 61
                                              79********************************************97 PP

2Myb_DNA-binding543.9e-1767112148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                               rg+++ eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00038.125  67 RGKFSSEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                                               89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.549961IPR017930Myb domain
SuperFamilySSF466892.35E-3111108IPR009057Homeodomain-like
SMARTSM007171.6E-151363IPR001005SANT/Myb domain
PfamPF002492.7E-171461IPR001005SANT/Myb domain
CDDcd001673.95E-121661No hitNo description
PROSITE profilePS5129426.62162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2765117IPR009057Homeodomain-like
SMARTSM007174.1E-1666114IPR001005SANT/Myb domain
PfamPF002497.2E-1667112IPR001005SANT/Myb domain
CDDcd001671.16E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRAPCCDDN GLKKGPWTPE EDQKLVNYIK KQGHGSWRAL PKHAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SSEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHRPRT DLFSSLNQIL AMANIKDLME PYEEQALRLQ SEALQLARLQ YLQYLIQSAS  180
SMNQPNSLIS SFNDLEAIST LLVASSSKPY YQTNSEETLW NTNYQTDINT MCSQVNEQIA  240
LTPSQTQQFP STFEDFCNLS MNDYSNQDTA SRIIQIESGD PISPFPINGF SSSLNYIDNS  300
TNNNQADVSG SSGCGASASS SPIWPEVLLE DPFINENLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853158.10.0transcription factor MYB39
SwissprotQ9S9Z21e-104MYB93_ARATH; Transcription factor MYB93
TrEMBLU5CXF70.0U5CXF7_AMBTC; Uncharacterized protein
STRINGERN146250.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-98myb domain protein 93
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]