PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00038.125 | ||||||||
Common Name | AMTR_s00038p00183620, LOC18442889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 340aa MW: 38212.7 Da PI: 5.6359 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 9.7e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+++k+ G g+W++ +++ g++R++k+c++rw +yl evm_27.model.AmTr_v1.0_scaffold00038.125 14 KGPWTPEEDQKLVNYIKKQGHGSWRALPKHAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.9e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l evm_27.model.AmTr_v1.0_scaffold00038.125 67 RGKFSSEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.549 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.35E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.95E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.621 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MGRAPCCDDN GLKKGPWTPE EDQKLVNYIK KQGHGSWRAL PKHAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SSEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHRPRT DLFSSLNQIL AMANIKDLME PYEEQALRLQ SEALQLARLQ YLQYLIQSAS 180 SMNQPNSLIS SFNDLEAIST LLVASSSKPY YQTNSEETLW NTNYQTDINT MCSQVNEQIA 240 LTPSQTQQFP STFEDFCNLS MNDYSNQDTA SRIIQIESGD PISPFPINGF SSSLNYIDNS 300 TNNNQADVSG SSGCGASASS SPIWPEVLLE DPFINENLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-32 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00180 | DAP | Transfer from AT1G34670 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006853158.1 | 0.0 | transcription factor MYB39 | ||||
Swissprot | Q9S9Z2 | 1e-104 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | U5CXF7 | 0.0 | U5CXF7_AMBTC; Uncharacterized protein | ||||
STRING | ERN14625 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 3e-98 | myb domain protein 93 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00038.125 |
Entrez Gene | 18442889 |
Publications ? help Back to Top | |||
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