PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00037.62
Common NameAMTR_s00037p00144010, LOC18445688
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 334aa    MW: 38241.8 Da    PI: 5.2921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00037.62genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.31e-5561331128
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkky 68 
                                              lppGfrFhPtdeelv +yL++k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky
  evm_27.model.AmTr_v1.0_scaffold00037.62   6 LPPGFRFHPTDEELVGYYLAHKIHGQKIEL-EIIPEVDLYKCEPWDLPdKsLLPSKDLEWYFYSPRDRKY 74 
                                              79****************************.99**************95434555777************ PP

                                      NAM  69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                              ++g+r+nrat++gyWkatgkd++v++  g++ g+kktLv+y+grap+g++t+Wvmheyrl
  evm_27.model.AmTr_v1.0_scaffold00037.62  75 PNGSRTNRATRAGYWKATGKDRKVHA-LGHALGMKKTLVYYRGRAPNGQRTNWVMHEYRL 133
                                              *************************9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-614157IPR003441NAC domain
PROSITE profilePS5100559.0816157IPR003441NAC domain
PfamPF023652.9E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAPTTLPPGF RFHPTDEELV GYYLAHKIHG QKIELEIIPE VDLYKCEPWD LPDKSLLPSK  60
DLEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRKVHA LGHALGMKKT LVYYRGRAPN  120
GQRTNWVMHE YRLVDNDDCE TPWKSQDMCA LCRVFKKSGC GPKIGEHFGA QDYGSCSVVE  180
DWIVEHNIEE ELSEKQDSRF PSDTSSSEII GASSIDVRES RWPQFSMDEV TSLENPSPNI  240
IKDNAATQFP NDANYPPLEV HDFPQMDPLY LKFSKREGME EFIKAEKCSA HNTTSEGDIL  300
EEIWHLARAS QDDFPLILNS WNRIHANPES LSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-55116315174NAC domain-containing protein 19
3swm_B7e-55116315174NAC domain-containing protein 19
3swm_C7e-55116315174NAC domain-containing protein 19
3swm_D7e-55116315174NAC domain-containing protein 19
3swp_A7e-55116315174NAC domain-containing protein 19
3swp_B7e-55116315174NAC domain-containing protein 19
3swp_C7e-55116315174NAC domain-containing protein 19
3swp_D7e-55116315174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855883.10.0NAC domain-containing protein 45
TrEMBLU5D5370.0U5D537_AMBTC; Uncharacterized protein
STRINGERN173500.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.12e-87NAC domain containing protein 57
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]