PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00036.42
Common NameAMTR_s00036p00107460, LOC18443610
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 307aa    MW: 34280.3 Da    PI: 6.0989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00036.42genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-151562148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             +g W+++Ed++l d+v ++G g+W++++ + g+ R +k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00036.42 15 KGLWSPDEDQRLRDYVLRFGHGCWSSVPIRAGLQRNGKSCRLRWINYL 62
                                             678*******************************************97 PP
2Myb_DNA-binding56.65.9e-1868113148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                              rg +T++E+e ++++++ lG++ W+ Ia +++ gRt++++k++w++yl
  evm_27.model.AmTr_v1.0_scaffold00036.42  68 RGLFTPQEHETILRLHATLGNK-WSQIATHLP-GRTDNEIKNYWNTYL 113
                                              788*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6721062IPR017930Myb domain
SuperFamilySSF466891.24E-2812109IPR009057Homeodomain-like
SMARTSM007172.8E-101464IPR001005SANT/Myb domain
PfamPF002491.3E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-201669IPR009057Homeodomain-like
CDDcd001678.37E-91862No hitNo description
PROSITE profilePS5129427.00163117IPR017930Myb domain
SMARTSM007171.4E-1667115IPR001005SANT/Myb domain
PfamPF002491.5E-1668113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2770117IPR009057Homeodomain-like
CDDcd001673.37E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGCKSCETPK PKYKKGLWSP DEDQRLRDYV LRFGHGCWSS VPIRAGLQRN GKSCRLRWIN  60
YLRPGLKRGL FTPQEHETIL RLHATLGNKW SQIATHLPGR TDNEIKNYWN TYLKKKVLKL  120
DDDHLNSNKE SKDFGVPDSH AIEEEPNFQI PKSGSRTTLD NLGDTDQSSS SCSGLHTSQE  180
MYSAASLEDK AGFCSANSVK GFPVPPKLLF SSWLQSNNLS QEPRAIGDTA LFGDLNNFSS  240
CEGIFDNFVE GQGSAWDSEY SFGGETQNGA FWMPCEIETA NSTTGICDNL LPKDIPDNFL  300
FVHDLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241111723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853859.10.0transcription factor WER
TrEMBLU5CQ700.0U5CQ70_AMBTC; Uncharacterized protein
STRINGERN153260.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.17e-54myb domain protein 19
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]