PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00033.259
Common NameAMTR_s00033p00241280, LOC18442677
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family G2-like
Protein Properties Length: 387aa    MW: 42787.6 Da    PI: 6.6797
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00033.259genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.99.4e-33236291156
                                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                               k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  evm_27.model.AmTr_v1.0_scaffold00033.259 236 KARRCWSPELHRRFVNALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 291
                                               68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.531233293IPR017930Myb domain
SuperFamilySSF466897.84E-18234294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-29234294IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-27236291IPR006447Myb domain, plants
PfamPF002491.3E-7238289IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGSPSELSLD YKPPCKGEER FSKPSGANER FFKAVLEVGG NGVDRVVRIE ELVACLEEER  60
RKIDVFKREL PLCMLLLNDA IDDLKEQARQ CRLRGPVLEE FIPIKKAQEE RENEAKAERD  120
CKDKMNWMSS AQLWSDNSDN SEEKKEKLDE YEAPSEELQK TDFGEKAYTI GRYRNSGGAF  180
VPLNGNGNGN GLVRKEENDI VDLSLSNGGI KELGHVSPKG SCRGNAGSSQ SALQRKARRC  240
WSPELHRRFV NALQQLGGSQ VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPNVSVS  300
SANSNQQNPP LVLLSNLWVP HDKLYNQTSS TASGSSSQSF QLVKKTASSQ SGSPQGPFQY  360
PGKARTSVNG GDSGGEEDGL SDEETN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-15236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-15236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-15236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-15236289154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852953.10.0myb family transcription factor EFM
TrEMBLU5CWT60.0U5CWT6_AMBTC; Uncharacterized protein
STRINGERN144200.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25631133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-65G2-like family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]