PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00032.36 | ||||||||
Common Name | AMTR_s00032p00057800, LOC18443059 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 32627.4 Da PI: 5.277 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.8e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv ++k +G g+W++ ++ g+ R++k+c++rw +yl evm_27.model.AmTr_v1.0_scaffold00032.36 16 KGAWTPSEDMKLVSYIKNHGHGNWRALPKQAGLLRCGKSCRLRWTNYL 63 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 3e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+e ++++++++G++ W++Ia++++ gRt++++k+ w+++l evm_27.model.AmTr_v1.0_scaffold00032.36 69 RGNFSREEEETIIKLHELWGNR-WSLIASRLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.877 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.621 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.42E-11 | 71 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-26 | 71 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGRGRAPCCE KVGLNKGAWT PSEDMKLVSY IKNHGHGNWR ALPKQAGLLR CGKSCRLRWT 60 NYLRPDIKRG NFSREEEETI IKLHELWGNR WSLIASRLPG RTDNEIKNVW NTHLKKRLGS 120 KVKSSCFGDP SSSCGSSSQS SSSNCTQEDQ SNPKEANPSF EFDLSPKNCH PNLLEDTFEI 180 PIEPELGFFD AFNDIFDDNS SLVSSLDGPT NSNGDKPQIM GFEEVTDEKE FANWAKFLER 240 ELDLKEIENA QPSHAKDDGA IQPNPCLIDE RVESSPIYFD KWPSSPLLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 14 | 120 | 5 | 110 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006853322.1 | 0.0 | transcription factor MYB6 | ||||
TrEMBL | U5CXA2 | 0.0 | U5CXA2_AMBTC; Uncharacterized protein | ||||
STRING | ERN14789 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-67 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00032.36 |
Entrez Gene | 18443059 |
Publications ? help Back to Top | |||
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