PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00032.2
Common NameAMTR_s00032p00016380
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 430aa    MW: 47044.9 Da    PI: 5.2075
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00032.2genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.9e-31207265259
                                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                             +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  evm_27.model.AmTr_v1.0_scaffold00032.2 207 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRNDPNMLVITYTSEHNHP 265
                                             699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-31197267IPR003657WRKY domain
PROSITE profilePS5081133.006201267IPR003657WRKY domain
SuperFamilySSF1182901.57E-26204267IPR003657WRKY domain
SMARTSM007741.2E-37206266IPR003657WRKY domain
PfamPF031066.4E-26208265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDNDQGDLSD IVRASGGGPE PTFEWHFPTN STSFPAISED FGDPFSVFRH PEINFPSNSS  60
ATMTKPSIGG EREREPMLNE AGLMVGEEMR PCELLSRMLQ ISTPKSKASP VCGLINSSSS  120
SSTSCSTSSS SVSPRIVKTP IVGASDNSVK TQLVVGSVGC QSESNGLQIS SPRNSGIKRR  180
KSQTKKVVCI PAPSAATNRQ SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA  240
RKQVERSRND PNMLVITYTS EHNHPWPTQR NALAGSTRSQ PMKANSLKNS PSTQQNPNLN  300
SALSIKQEIK DTDNSTITNT RSSDNYTNND VDSSISIKDD IMGAEREVIM EDRGFNPGFP  360
VYRPVPTDQN HSDDFFADLG ELEPDPLNLM FNQGFNEDKS DEDGENKEVE PFSLFDWSEN  420
SFGDSRRGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-25181268280Disease resistance protein RRS1
5w3x_D5e-25181268280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853288.20.0probable WRKY transcription factor 35
TrEMBLU5CXR10.0U5CXR1_AMBTC; Uncharacterized protein
STRINGERN147550.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-76WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]