PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00030.96

Common Name

AMTR_s00030p00156320, LOC18444380

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Dof

Protein Properties

Length: 277aa MW: 30821.4 Da PI: 7.9913

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00030.96	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.7	2.3e-37	38	97	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +cprC+stntkfCyynnys +qPryfCk+CrryWtkGGalrnvPvGgg+rk+kk + evm_27.model.AmTr_v1.0_scaffold00030.96 38 PQSPNCPRCNSTNTKFCYYNNYSHAQPRYFCKTCRRYWTKGGALRNVPVGGGCRKSKKPN 97 56779***************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-24	28	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.3E-32	40	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.5	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MNSLEWQQAD LVMVNPLEDV ISSQSKQLGE RKLKAQTPQS PNCPRCNSTN TKFCYYNNYS 60 HAQPRYFCKT CRRYWTKGGA LRNVPVGGGC RKSKKPNSTK ALQKPTLNYS NEPTLSLSKT 120 NHGSPSFPSC YVMQDGNHEF FLPFQGIGYS SGPDLLQESK PSLLMSDFGC RDVTSFMEPN 180 PRPAHLGNLG FQNFGSFLNL SMEGLNGYGY HQGSDRALFS LENPNDSSSR PVDEFNGLQE 240 KMVETVIDPS TQQNGMGVSW HGVQNSGFSE LQSFFF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006854615.1	0.0	dof zinc finger protein DOF3.7
TrEMBL	U5D3V2	0.0	U5D3V2_AMBTC; Uncharacterized protein
STRING	ERN16082	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	5e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00030.96
Entrez Gene	18444380

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]