PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00030.93 | ||||||||
Common Name | AMTR_s00030p00146410, LOC18444377 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 330aa MW: 37447 Da PI: 8.325 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.3e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W + Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl evm_27.model.AmTr_v1.0_scaffold00030.93 14 RGPWIAREDTLLKRYIETHGEGRWRSLPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++E+el+v+++++lG++ W++Ia +++ gRt++++k++w+++l evm_27.model.AmTr_v1.0_scaffold00030.93 67 RGNIKQDEEELIVRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 677789****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.585 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.88E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.93E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.489 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 5.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.78E-10 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MGRAPCCSKV GLLRGPWIAR EDTLLKRYIE THGEGRWRSL PKKAGLLRCG KSCRLRWMNY 60 LRPNIKRGNI KQDEEELIVR LHALLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKNLRSKG 120 IDPRTHKPIS TQSPNSSNSK QESTSNKKSR APKRKGKDER EREHCAPKIH LPKPNRISNT 180 TFTMPISHQR PRNVEIIAPT KNVSTMSPTS QEKNTNHESF HLDQKQSSMG EDLYGVGTSN 240 LVEDCLSWGA EDEWLSTSNT ESPCDNMLEK VYEEYLDLLN CDHDSILGSK EGNLINEEGE 300 DSGSDGWDCT YWEGSVLNFP SIPSDNTFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-22 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 7e-22 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-22 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006854612.1 | 0.0 | myb-related protein 308 isoform X1 | ||||
TrEMBL | U5D0Y5 | 0.0 | U5D0Y5_AMBTC; Uncharacterized protein | ||||
STRING | ERN16079 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-68 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00030.93 |
Entrez Gene | 18444377 |
Publications ? help Back to Top | |||
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