PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00029.4 | ||||||||
Common Name | AMTR_s00029p00021500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB_related | ||||||||
Protein Properties | Length: 160aa MW: 17423 Da PI: 4.7766 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.1e-10 | 18 | 62 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT e ++ + +a + + + +W++Ia++++ g+t ++k ++ evm_27.model.AmTr_v1.0_scaffold00029.4 18 VWTREQEKAFENALAIHSEEsadRWEKIAAEVN-GKTVADIKRHYE 62 7*****************99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-5 | 12 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.984 | 14 | 69 | IPR017884 | SANT domain |
SMART | SM00717 | 8.2E-9 | 15 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.18E-11 | 17 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-8 | 18 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.37E-8 | 19 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MTIDTVESAA SDKKNSSVWT REQEKAFENA LAIHSEESAD RWEKIAAEVN GKTVADIKRH 60 YELLVEDVNC IESGRVPLPS YSSLDGSTDL AGETGVGKKG AQYASHLQSS DSSPSAKGSS 120 RSDQERRKGI AWTEEEHRYG FLTMVGTSNF SFWSSIEGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-20 | 10 | 87 | 2 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011624612.1 | 5e-96 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 6e-39 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | W1PMU3 | 1e-113 | W1PMU3_AMBTC; Uncharacterized protein | ||||
STRING | ERN09373 | 1e-113 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-37 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00029.4 |
Publications ? help Back to Top | |||
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