PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00029.323
Common NameAMTR_s00029p00215750
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 286aa    MW: 32475.3 Da    PI: 9.5366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00029.323genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-081560447
                                              S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                              WT eE +l+ +a +++ ++   +W+ Ia+ ++ g+t  ++  ++ ++
  evm_27.model.AmTr_v1.0_scaffold00029.323 15 WTLEENKLFEKALALYDKEtpdRWHMIAKIIP-GKTISDLMGHYKQL 60
                                              *****************99*************.********999876 PP
2Myb_DNA-binding43.38.2e-14118162347
                                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                               +W+++E+ l++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky
  evm_27.model.AmTr_v1.0_scaffold00029.323 118 PWSEDEHRLFLLGLKKHGKGDWRNISRNFVQSRTATQVASHAQKY 162
                                               8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-71163IPR001005SANT/Myb domain
SuperFamilySSF466899.33E-121368IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-41462IPR009057Homeodomain-like
PfamPF002491.4E-51560IPR001005SANT/Myb domain
CDDcd001671.11E-71561No hitNo description
PROSITE profilePS500906.2841561IPR017877Myb-like domain
PROSITE profilePS5129419.381111167IPR017930Myb domain
SuperFamilySSF466893.3E-16113167IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-16114165IPR006447Myb domain, plants
SMARTSM007177.5E-12115165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-11115161IPR009057Homeodomain-like
PfamPF002494.0E-11118162IPR001005SANT/Myb domain
CDDcd001675.06E-10118163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEFHSSAPYF PSSIWTLEEN KLFEKALALY DKETPDRWHM IAKIIPGKTI SDLMGHYKQL  60
VDDISRIEAG WIELPSYNSS GFRLDWFSGD SQSVDGLKNG SRRASAKPPD HERKKGVPWS  120
EDEHRLFLLG LKKHGKGDWR NISRNFVQSR TATQVASHAQ KYFIRLSSGS KDKRRSSIHD  180
ITTANLSEKR SPSPPSPNIQ SQAFNTQLST SSDPIKTQNF NSFFSPNQTS EEVGSFISSV  240
PQAKATMYIS PPRTISPYEE KLHESDMGTQ HLMYRLQAYN LHNYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1615811177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848111.20.0transcription factor DIVARICATA isoform X2
RefseqXP_020525346.10.0transcription factor DIVARICATA isoform X1
RefseqXP_020525347.10.0transcription factor DIVARICATA isoform X2
SwissprotQ8S9H72e-77DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLW1PIA20.0W1PIA2_AMBTC; Uncharacterized protein
STRINGERN096920.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-67MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]