PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00029.28 | ||||||||
Common Name | AMTR_s00029p00040760, LOC18437545 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | TCP | ||||||||
Protein Properties | Length: 242aa MW: 25827.5 Da PI: 10.4682 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.4 | 2.5e-38 | 49 | 144 | 3 | 97 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++a++ evm_27.model.AmTr_v1.0_scaffold00029.28 49 VKKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPANF 118 79******************************************************************88 PP TCP 73 ceaesssssasnsssg....kaaksaaks 97 ++a+s ++ ++ +++++a++ evm_27.model.AmTr_v1.0_scaffold00029.28 119 SSAASATAPKD---INvsfkDHNSQATPA 144 83333333333...232222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 54 | 108 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.2E-33 | 54 | 142 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSADGAGNGS LSSSDQQQQQ RQHHHHQSQG AQHHHHQNQG GASSNVLSVK KAPSKDRHSK 60 VDGRGRRIRM PIICAARVFQ LTRELGHKSD GQTIEWLLRQ AEPSIIAATG SGTTPANFSS 120 AASATAPKDI NVSFKDHNSQ ATPAFKDQNT PFLLGKRLRL DDTKDQNAPV APSAGGAAFW 180 ALPSRPESGQ VWSFGPPEIS ANRLGNYLPI GQPLVGQGHL NLLAALSSEP SASGRRDDDH 240 R* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011624621.1 | 1e-176 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 1e-63 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | W1PHC6 | 1e-175 | W1PHC6_AMBTC; Uncharacterized protein | ||||
STRING | ERN09397 | 1e-176 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8514 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-58 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00029.28 |
Entrez Gene | 18437545 |
Publications ? help Back to Top | |||
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