PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00026.86 | ||||||||
Common Name | AMTR_s00026p00180130, LOC18438584 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 26515.1 Da PI: 10.6205 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 109 | 157 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +grW AeIrd r r++lg+f+taeeAa+a++ a+++l+g evm_27.model.AmTr_v1.0_scaffold00026.86 109 FRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDSAARRLRG 157 8*******.**********32....25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-29 | 108 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-21 | 108 | 166 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.128 | 108 | 165 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-31 | 108 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.81E-29 | 109 | 164 | No hit | No description |
Pfam | PF00847 | 1.2E-13 | 109 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MALYFSSIPN RPLSDTFGTQ PTGSLEPDLT CLSNSFEPTQ AFFPNPFEPT RPQFLIPFEP 60 TRAHFPNPIE PPSSLEGIAA VVGPKVLFGL TTSPPQALPR RKPAEPRTFR GVRKRPWGRW 120 SAEIRDRIGR CRHWLGTFDT AEEAARAYDS AARRLRGSKA RTNFSIPSAL YIPQPPGGGS 180 SSGPIENRKM PAAAKGRRSC AVVRSVDELV SSAVVQREAG GVGGGGVGLD LRLGVDVAEL 240 RGAAPE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-17 | 104 | 164 | 10 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006848830.1 | 1e-176 | ethylene-responsive transcription factor ERF084 | ||||
TrEMBL | W1PRR7 | 1e-175 | W1PRR7_AMBTC; Uncharacterized protein | ||||
STRING | ERN10411 | 1e-176 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 1e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00026.86 |
Entrez Gene | 18438584 |
Publications ? help Back to Top | |||
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