PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00026.77 | ||||||||
Common Name | AMTR_s00026p00153500, LOC18438575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | G2-like | ||||||||
Protein Properties | Length: 223aa MW: 25243.5 Da PI: 6.8967 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.6 | 6.9e-34 | 50 | 104 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWtp+LH+rFvea++qLGG+e+AtPk +l++m+v+gLt++hvkSHLQkYRl evm_27.model.AmTr_v1.0_scaffold00026.77 50 RQRLRWTPDLHDRFVEAITQLGGPERATPKGVLKIMGVQGLTIYHVKSHLQKYRL 104 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.783 | 47 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-32 | 48 | 105 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-17 | 48 | 104 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-25 | 51 | 105 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-9 | 52 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.6E-20 | 135 | 180 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MHEEIAFVNM LHEGEFSESS SVPQNAHRYL GLPSYSIRSN MASRGGPSTR QRLRWTPDLH 60 DRFVEAITQL GGPERATPKG VLKIMGVQGL TIYHVKSHLQ KYRLAKFIPE SIGGEKIDRN 120 DKEVDADQTA SSRLDIDEAL QMQIEVQKRL NEQAEVQRHL QLRMEAQARY IQKILEEQQQ 180 NEKPSSPTTE GKSLWEKDQV PLFPPLSSEE LSLPCGSPSK RT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-26 | 50 | 107 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-26 | 50 | 107 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-26 | 50 | 107 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-26 | 50 | 107 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006848821.1 | 1e-165 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 4e-56 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | W1PK83 | 1e-163 | W1PK83_AMBTC; Uncharacterized protein | ||||
STRING | ERN10402 | 1e-164 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-58 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00026.77 |
Entrez Gene | 18438575 |
Publications ? help Back to Top | |||
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