PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00025.50 | ||||||||
Common Name | AMTR_s00025p00072580, LOC18440553 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Trihelix | ||||||||
Protein Properties | Length: 306aa MW: 34408.3 Da PI: 7.8254 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 74.9 | 1.3e-23 | 35 | 124 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykk 63 rWt+qe+ +Lie++r e+r r+ + + +W+++s++++++g++r+p+qC+++w+ l+++yk+ evm_27.model.AmTr_v1.0_scaffold00025.50 35 RWTRQEIVVLIEGKRVEESRGRKYRvfdggpaNTESKWSSISSYCKRHGVNREPVQCRKRWSTLSRDYKR 104 8*********************864444555599************************************ PP trihelix 64 ikegekkrtsessstcpyfdql 85 i+e+e+++ +++s + + ++l evm_27.model.AmTr_v1.0_scaffold00025.50 105 IREWERSN--KDQSFWLLRNDL 124 ******95..566668877777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-6 | 35 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.4E-13 | 35 | 114 | No hit | No description |
PROSITE profile | PS50090 | 6.586 | 35 | 99 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MECQHGSGQV AETRDDPISN SPSNVDPIAP PRFPRWTRQE IVVLIEGKRV EESRGRKYRV 60 FDGGPANTES KWSSISSYCK RHGVNREPVQ CRKRWSTLSR DYKRIREWER SNKDQSFWLL 120 RNDLRRESKL PGFFDRELYD IIERAFSCGR QQGGCSSFVK EDETDPNAGR GTTEEGLFSD 180 AELSEAQEDV PESPGKEITG SPSATPPPGM SSEKPLPPNS EKDSAPKSTG LKRTHASDDE 240 ENGFKVRRRI LSILERNGRV LAAHIESHNL NCEMDRNQRS EQAQKLVGVL GKLAEALSKI 300 ADKLP* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006850755.1 | 0.0 | trihelix transcription factor ASR3 | ||||
TrEMBL | W1PWZ0 | 0.0 | W1PWZ0_AMBTC; Uncharacterized protein | ||||
STRING | ERN12336 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1747 | 13 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-69 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00025.50 |
Entrez Gene | 18440553 |
Publications ? help Back to Top | |||
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