PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00025.413 | ||||||||
Common Name | AMTR_s00025p00250380, LOC18440920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | GATA | ||||||||
Protein Properties | Length: 209aa MW: 23094.5 Da PI: 10.2648 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.9 | 6.5e-19 | 113 | 147 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+t kTplWR+gp g+k+LCnaCG++y+k g+ evm_27.model.AmTr_v1.0_scaffold00025.413 113 CADCKTVKTPLWRNGPLGPKSLCNACGIRYKKLGK 147 ********************************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.637 | 107 | 162 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.3E-15 | 107 | 159 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-14 | 111 | 153 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.1E-16 | 112 | 148 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.12E-16 | 112 | 162 | No hit | No description |
Pfam | PF00320 | 7.8E-17 | 113 | 147 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 113 | 138 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MIQGAALRAP TPVYGHSHFK KFWLKKKEIE DAEERLRVVS AQRPKPSYSS IEHSSLTKSV 60 RFSMGKSELD YAFSLSSDNS SDNGASDRKK KEEEETGDLS SISPRTPTPV NACADCKTVK 120 TPLWRNGPLG PKSLCNACGI RYKKLGKKVN ASNGSPRGIK RKDEVEAVED KFWKRRPFLP 180 KKGRVIDRDE KEGAMLLMAL SCGLVAPP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006851118.1 | 1e-152 | GATA zinc finger domain-containing protein 8 | ||||
TrEMBL | W1PXK4 | 1e-151 | W1PXK4_AMBTC; Uncharacterized protein | ||||
STRING | ERN12699 | 1e-152 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 6e-17 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00025.413 |
Entrez Gene | 18440920 |
Publications ? help Back to Top | |||
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