PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.385
Common NameAMTR_s00025p00244880
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 207aa    MW: 22796.2 Da    PI: 9.0559
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.385genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.96.3e-24957149
                                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                              k+i+++  rqv fskRr+g++KKA+EL++LC+aevavi+fs  gk y++
  evm_27.model.AmTr_v1.0_scaffold00025.385  9 KKINDQDARQVCFSKRRAGLFKKASELCILCGAEVAVIVFSLAGKAYTF 57
                                              6899********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.366161IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-28173IPR002100Transcription factor, MADS-box
CDDcd002659.50E-39273No hitNo description
PRINTSPR004046.0E-20323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRRKIEIKK INDQDARQVC FSKRRAGLFK KASELCILCG AEVAVIVFSL AGKAYTFGHP  60
CVDSVLDRFH RHQTSGPTGP TPGMSGPTHG LVCEYAELQR QLELEKKKGA SLAKKTRQEH  120
PGPLGQQQFW WDADLQSLCN YQLEQFLSAL LELKAKVDKR AIELTCGQPG GGAHGFAWVP  180
PPATAMKSYG GQDYFMKLMY GDTTPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-15169169Myocyte-specific enhancer factor 2B
1tqe_Q1e-15169169Myocyte-specific enhancer factor 2B
1tqe_R1e-15169169Myocyte-specific enhancer factor 2B
1tqe_S1e-15169169Myocyte-specific enhancer factor 2B
6c9l_A1e-15169169Myocyte-specific enhancer factor 2B
6c9l_B1e-15169169Myocyte-specific enhancer factor 2B
6c9l_C1e-15169169Myocyte-specific enhancer factor 2B
6c9l_D1e-15169169Myocyte-specific enhancer factor 2B
6c9l_E1e-15169169Myocyte-specific enhancer factor 2B
6c9l_F1e-15169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006851090.31e-154agamous-like MADS-box protein AGL61
TrEMBLW1PXS01e-152W1PXS0_AMBTC; Uncharacterized protein
STRINGERN126711e-153(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-33AGAMOUS-like 62
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]