PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.295
Common NameAMTR_s00025p00217130
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SBP
Protein Properties Length: 354aa    MW: 39104.5 Da    PI: 7.6656
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.295genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP44.63.9e-141902214778
                                               SSEEETTT--SS--S-STTTT-------S--- CS
                                       SBP  47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                                rfh l efD++krsCrrrLa+hn+rrrk+q+
  evm_27.model.AmTr_v1.0_scaffold00025.295 190 KRFHGLLEFDDRKRSCRRRLADHNARRRKSQP 221
                                               59***************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114111.041137219IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.77E-11190224IPR004333Transcription factor, SBP-box
PfamPF031103.0E-7190218IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEWDMKPTSQ WNWENFAMFL GKGNETIKRV AQPTDWGSVH NGDFGNGLFT QSASSLGYGT  60
FSKRAIPSCF DSSSFNISSG SSIFSSELNK SEVMKDSKYR DASFLDLSSH FCSSFHLQER  120
IPEFSAKEND YNGLKGSNLS PLPLVSASLG EPLMGLKLGK RTYFEDVSAG NSIRITAASS  180
EPSLLPGVVK RFHGLLEFDD RKRSCRRRLA DHNARRRKSQ PDAILLNPSR TTSSHHDCRS  240
LERLALDPVA STAATTTTRS SSSSWEDTYG LRFARSKASW ESLTEESHVA NSEMPSFDRM  300
LMLRDAPLQT FHQGIEAGSA GLEEAPDRRR ALSLLSSDSW GSTMAHSPAY LTQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200217RKRSCRRRLADHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526749.10.0squamosa promoter-binding-like protein 12
TrEMBLW1PXH90.0W1PXH9_AMBTC; Uncharacterized protein
STRINGERN125810.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]