PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00025.171 | ||||||||
Common Name | AMTR_s00025p00151950, LOC18440675 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | G2-like | ||||||||
Protein Properties | Length: 280aa MW: 31042.1 Da PI: 6.9448 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.2 | 2.1e-34 | 30 | 84 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG+ekAtPk+++++m+vkgLtl+h+kSHLQkYRl evm_27.model.AmTr_v1.0_scaffold00025.171 30 KPRLRWTAELHQRFVDAVTQLGGPEKATPKSVMRIMDVKGLTLYHLKSHLQKYRL 84 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.513 | 27 | 87 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-33 | 28 | 85 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-24 | 30 | 85 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 9.5E-17 | 30 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.6E-8 | 32 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.6E-25 | 136 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDSEANGSFR QIDGQDSSDS SRLILSADPK PRLRWTAELH QRFVDAVTQL GGPEKATPKS 60 VMRIMDVKGL TLYHLKSHLQ KYRLGKQTQR EAVINSNGRD VSLEEVTTVS DSSICLGSEN 120 RPTDTCSPTM VTDTLQISEA LRLQIEVQKS LHEQLEVQRH LQMRIEAQGK YLQSILEKAR 180 ETLARHHMGS AGIEETRREL SELSAKVSDG CRNPATFSLI GHQGLTGSQA KCEVLERLKK 240 KPMAPVLDLN SNLEPSNEDF GSGGCRKKEF DLNGFELGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-20 | 30 | 86 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-20 | 30 | 86 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-20 | 30 | 86 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-20 | 30 | 86 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006850876.1 | 0.0 | protein PHR1-LIKE 3 isoform X2 | ||||
Swissprot | Q8LAJ7 | 7e-69 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | W1PQZ0 | 0.0 | W1PQZ0_AMBTC; Uncharacterized protein | ||||
STRING | ERN12457 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 3e-71 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00025.171 |
Entrez Gene | 18440675 |
Publications ? help Back to Top | |||
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