PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.171
Common NameAMTR_s00025p00151950, LOC18440675
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family G2-like
Protein Properties Length: 280aa    MW: 31042.1 Da    PI: 6.9448
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.171genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.22.1e-343084155
                                   G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                              kprlrWt eLH+rFv+av+qLGG+ekAtPk+++++m+vkgLtl+h+kSHLQkYRl
  evm_27.model.AmTr_v1.0_scaffold00025.171 30 KPRLRWTAELHQRFVDAVTQLGGPEKATPKSVMRIMDVKGLTLYHLKSHLQKYRL 84
                                              79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.5132787IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-332885IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-243085IPR006447Myb domain, plants
SuperFamilySSF466899.5E-173085IPR009057Homeodomain-like
PfamPF002498.6E-83283IPR001005SANT/Myb domain
PfamPF143792.6E-25136182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDSEANGSFR QIDGQDSSDS SRLILSADPK PRLRWTAELH QRFVDAVTQL GGPEKATPKS  60
VMRIMDVKGL TLYHLKSHLQ KYRLGKQTQR EAVINSNGRD VSLEEVTTVS DSSICLGSEN  120
RPTDTCSPTM VTDTLQISEA LRLQIEVQKS LHEQLEVQRH LQMRIEAQGK YLQSILEKAR  180
ETLARHHMGS AGIEETRREL SELSAKVSDG CRNPATFSLI GHQGLTGSQA KCEVLERLKK  240
KPMAPVLDLN SNLEPSNEDF GSGGCRKKEF DLNGFELGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-203086157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-203086157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-203086157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-203086157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850876.10.0protein PHR1-LIKE 3 isoform X2
SwissprotQ8LAJ77e-69PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLW1PQZ00.0W1PQZ0_AMBTC; Uncharacterized protein
STRINGERN124570.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.13e-71G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]