PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.47
Common NameAMTR_s00024p00090860
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family BBR-BPC
Protein Properties Length: 361aa    MW: 40536 Da    PI: 10.1808
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.47genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind295.52.1e-90703601301
                                GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd............ 57 
                                              md+d+    rn+gy ++   lk+ lglqlmss+a+rd   +++ +  +++   + +r+            
  evm_27.model.AmTr_v1.0_scaffold00024.47  70 MDSDAGLGfRNWGYIDQP--LKQTLGLQLMSSVADRDILAKKSVI--QTS--NYPTRNpsipecgvpiss 133
                                              888888888******999..*****************88765544..222..233333345566677778 PP

                                GAGA_bind  58 .maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavel 126
                                               m+f  rd+++++r+  ++ ++ ++++  +   +  s+   +++vl++ ++ +++       + ++ ++ 
  evm_27.model.AmTr_v1.0_scaffold00024.47 134 sMEF-PRDNWMNQRDLPHTAKHFEMFSGNP---NFESK--DYSSVLPNPQTNNNHVL----PIMPPEMP- 192
                                              8***.9*******88766666555555554...32233..34445554444442222....22333333. PP

                                GAGA_bind 127 reeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl 196
                                                 + ++++p+e+ +++++e+++kk +q +++ k++k kk+k k +k+ ++ ++ s   + k+ kk+ + 
  evm_27.model.AmTr_v1.0_scaffold00024.47 193 ---QPNQVMPLENPPPVKTETQSKK-KQGNRTLKVQKPKKPKVKAPKEDQNGARTS---TNKSGKKNWNA 255
                                              ...3446777777666666655544.777888888999999886666655555554...67999****** PP

                                GAGA_bind 197 vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266
                                              v+ g+ +D++++P+PvCsCtG+ +qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmS+gaf 
  evm_27.model.AmTr_v1.0_scaffold00024.47 256 VIKGIPVDIAGIPIPVCSCTGVAQQCYRWGCGGWQSACCTTQMSMYPLPMSQKRRGARIAGRKMSGGAFI 325
                                              ********************************************************************** PP

                                GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                              k+Lek+aa+G+dls+ +DLk+hWAkHGtnkfvti+
  evm_27.model.AmTr_v1.0_scaffold00024.47 326 KVLEKVAADGHDLSKQIDLKTHWAKHGTNKFVTIK 360
                                              **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062176.8E-9970360IPR010409GAGA-binding transcriptional activator
SMARTSM012263.7E-11270360IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSLFIVYLYF PLSIYRIFLS LLQRPILDLR RRTLALVQGL FVDLDWAYRW VEQELDTSYV  60
ASIVFLLALM DSDAGLGFRN WGYIDQPLKQ TLGLQLMSSV ADRDILAKKS VIQTSNYPTR  120
NPSIPECGVP ISSSMEFPRD NWMNQRDLPH TAKHFEMFSG NPNFESKDYS SVLPNPQTNN  180
NHVLPIMPPE MPQPNQVMPL ENPPPVKTET QSKKKQGNRT LKVQKPKKPK VKAPKEDQNG  240
ARTSTNKSGK KNWNAVIKGI PVDIAGIPIP VCSCTGVAQQ CYRWGCGGWQ SACCTTQMSM  300
YPLPMSQKRR GARIAGRKMS GGAFIKVLEK VAADGHDLSK QIDLKTHWAK HGTNKFVTIK  360
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849467.30.0protein BASIC PENTACYSTEINE2
TrEMBLW1PSM80.0W1PSM8_AMBTC; Uncharacterized protein
STRINGERN110480.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.24e-64basic pentacysteine1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]