PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.337
Common NameAMTR_s00024p00250970
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 499aa    MW: 55817.4 Da    PI: 6.3855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.337genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-165097148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+WT+eEd ll+++++ +G g W+  +++ g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00024.337 50 KGPWTPEEDFLLINYINAHGEGGWTNLPKKAGLLRCGKSCRLRWMNYL 97
                                              79******************************99************97 PP
2Myb_DNA-binding47.44.3e-15108148648
                                               HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                               +eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00024.337 108 PEEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 148
                                               8****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-214198IPR009057Homeodomain-like
PROSITE profilePS5129414.0074597IPR017930Myb domain
SuperFamilySSF466892.51E-2847144IPR009057Homeodomain-like
SMARTSM007175.4E-134999IPR001005SANT/Myb domain
PfamPF002491.4E-145097IPR001005SANT/Myb domain
CDDcd001671.62E-105297No hitNo description
PROSITE profilePS5129423.69798152IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2399151IPR009057Homeodomain-like
SMARTSM007171.1E-14102150IPR001005SANT/Myb domain
CDDcd001678.37E-12108148No hitNo description
PfamPF002497.0E-14108148IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDGVSFSISL SFPPSSIPCP LLLPTAQNLH LYRSTPMGRS PCCSKLGLNK GPWTPEEDFL  60
LINYINAHGE GGWTNLPKKA GLLRCGKSCR LRWMNYLRPD VKRGYILPEE EDLILRLHRL  120
LGNRWSLIAG RIPGRTDNEI KNYWNTHLSK LLISQGIDPR THKPLAPESL TPPPPLPRTT  180
PKDPSFSRPT LLHQAHDFKP LFQEQIFTNP SHQKPSFFSY NNKENYNSHS QLPFELFPFP  240
HQPYPLKKEV EEVEFGAAPI MAIGNLSTMD FGALKNEVGE LKYPMMSTTQ MPTYVFHDHL  300
TLFPTASIED QNDQKQVMIS FANQNPLEPS LMEGSSMGLL HSNPIMQFGS SISTGFDLQP  360
ILTPMAYSSG QVSEIACSSM DHFAGLCHQQ QQQQFQPQQH QELQVQAPED RHKACDIQVH  420
YDLHNNGPLI QGVDGAFPVI IPPPDHFLLN PVNGEDCTSN LATNGTGWPN FNGDAALLSY  480
VHDMPPPLSS FQASVQEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-264815025126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1PTG60.0W1PTG6_AMBTC; Uncharacterized protein
STRINGERN113380.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-68myb domain protein 5
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]