PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.329
Common NameAMTR_s00024p00249750
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 154aa    MW: 18057.6 Da    PI: 10.5609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.329genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-154589448
                                              S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              W+ eEd++l++ ++ +G+g+W+t +++ g++R  k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00024.329 45 WSHEEDLRLIRHIEAYGKGSWTTLPQKAGLNRNSKSCRLRWMNYL 89
                                              *******************************************97 PP
2Myb_DNA-binding45.41.9e-1496138246
                                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                               g++++eEd+l+++++++  ++ W++Ia +++ gRt+ q+k++w++
  evm_27.model.AmTr_v1.0_scaffold00024.329  96 GNFSPEEDDLILRLHRLVENR-WSLIAGRVP-GRTDSQIKNFWNT 138
                                               89*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3133789IPR017930Myb domain
SMARTSM007174.6E-114191IPR001005SANT/Myb domain
SuperFamilySSF466892.23E-2841136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-214496IPR009057Homeodomain-like
PfamPF139211.6E-1445104No hitNo description
CDDcd001671.23E-84589No hitNo description
PROSITE profilePS5129422.13890144IPR017930Myb domain
SMARTSM007177.5E-1394142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2397141IPR009057Homeodomain-like
CDDcd001674.64E-1097138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MHFFNELLGY GGISCETLQA SYKPPMEREE TSAKKHAKRS GKRLWSHEED LRLIRHIEAY  60
GKGSWTTLPQ KAGLNRNSKS CRLRWMNYLR PDIKHGNFSP EEDDLILRLH RLVENRWSLI  120
AGRVPGRTDS QIKNFWNTRY RGKKHIYSSF ITI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-224514330127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578104.14e-44transcription repressor MYB6-like
SwissprotP200254e-43MYB38_MAIZE; Myb-related protein Zm38
TrEMBLW1PVL61e-110W1PVL6_AMBTC; Uncharacterized protein
STRINGERN113301e-111(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-45myb domain protein 4
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]