PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00024.225 | ||||||||
Common Name | AMTR_s00024p00225650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29301.8 Da PI: 7.0885 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.4e-18 | 7 | 54 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +++k +G + W +I+++ g++R++k+c++rw++yl evm_27.model.AmTr_v1.0_scaffold00024.225 7 KGAWTAEEDQILSQCIKTHGAKKWQSIPAKAGLKRCGKSCRLRWLNYL 54 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 9.7e-18 | 60 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl evm_27.model.AmTr_v1.0_scaffold00024.225 60 RGNISEEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 105 7899******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.753 | 2 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.31E-29 | 4 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-15 | 6 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 7 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 8 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.06E-10 | 9 | 54 | No hit | No description |
PROSITE profile | PS51294 | 25.848 | 55 | 109 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-17 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 60 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-25 | 62 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.74E-12 | 64 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAKNVNKGAW TAEEDQILSQ CIKTHGAKKW QSIPAKAGLK RCGKSCRLRW LNYLRPCIKR 60 GNISEEEEDL IIRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNTYLSKKLK FEKPAEDPKQ 120 RPRPKKQRLE TPTMRDSEPF NMEVSSSNSG HRSNGPSDAE HKISAVQAEN FKLGEDSSHA 180 GLVKDLEVVN FGDSYEVSRE EFSLDWLSNF LEADEEELGF LSSNNYLEEE YRDLIGISPL 240 YSWTSSSFAC TNHNCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-28 | 7 | 109 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020526119.1 | 0.0 | transcription factor WER | ||||
TrEMBL | W1PU71 | 0.0 | W1PU71_AMBTC; Uncharacterized protein | ||||
STRING | ERN11226 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 7e-55 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00024.225 |
Publications ? help Back to Top | |||
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