PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.223
Common NameAMTR_s00024p00224850, LOC18439415
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 273aa    MW: 30399.1 Da    PI: 7.7124
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.223genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.8e-161562148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+WT++Ed +l ++++ +G g W++ +++ g++R++k+c++rw++yl
  evm_27.model.AmTr_v1.0_scaffold00024.223 15 KGAWTAQEDTILTRYINTHGEGKWRALPKRSGLKRCGKSCRLRWLNYL 62
                                              79********************************************97 PP
2Myb_DNA-binding48.22.6e-1568112147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                               rg+ + eE++l+++++++lG++ W++Ia +++ gRt++++k++w++ 
  evm_27.model.AmTr_v1.0_scaffold00024.223  68 RGNISCEEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 112
                                               677788****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0421062IPR017930Myb domain
SuperFamilySSF466891.56E-2813109IPR009057Homeodomain-like
SMARTSM007178.4E-131464IPR001005SANT/Myb domain
PfamPF002494.0E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-221669IPR009057Homeodomain-like
CDDcd001678.57E-101762No hitNo description
PROSITE profilePS5129423.04763117IPR017930Myb domain
SMARTSM007177.6E-1467115IPR001005SANT/Myb domain
PfamPF002497.1E-1468113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2370116IPR009057Homeodomain-like
CDDcd001672.83E-1174113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRRPCYSKE EGLTKGAWTA QEDTILTRYI NTHGEGKWRA LPKRSGLKRC GKSCRLRWLN  60
YLRPNIKRGN ISCEEEDLII RLHNLLGNRW SLIAGRLPGR TDNEIKNYWN TNLGKKHQKN  120
STKNRQGSAN GQGSVLKEEA KPNPVVVRTK ASRCIGITAT TSPVAPEAPT IDPMTESTAH  180
HDKTASSNAP PALSVLPTFM DVDIGDLCIG TEFLQSCEKL VLDNSEDEFG SISLCFQNNF  240
SPDCRDWMEN TFHEGHSSQE SDSLAAFLYS EE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23131165107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849643.10.0transcription factor WER
SwissprotQ9FJA25e-59TT2_ARATH; Transcription factor TT2
TrEMBLW1PTS70.0W1PTS7_AMBTC; Uncharacterized protein
STRINGERN112240.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-61MYB family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  4. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  5. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  6. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  7. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  8. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]