PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.222
Common NameAMTR_s00024p00224470, LOC18439414
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 273aa    MW: 31041.9 Da    PI: 5.3101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.222genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+WT++Ed++l d++k +G g W+t ++  g++R++k+c++rw++yl
  evm_27.model.AmTr_v1.0_scaffold00024.222 14 KGAWTAQEDKILTDYIKTHGEGKWRTLSQSTGLKRCGKSCRLRWLNYL 61
                                              79********************************************97 PP

2Myb_DNA-binding569.4e-1867112148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                               rg+++ +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl
  evm_27.model.AmTr_v1.0_scaffold00024.222  67 RGNFSDQEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112
                                               89********************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.41961IPR017930Myb domain
SuperFamilySSF466894.4E-2912108IPR009057Homeodomain-like
SMARTSM007173.5E-131363IPR001005SANT/Myb domain
PfamPF002491.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-231568IPR009057Homeodomain-like
CDDcd001673.75E-91661No hitNo description
PROSITE profilePS5129425.15662116IPR017930Myb domain
SMARTSM007172.2E-1666114IPR001005SANT/Myb domain
PfamPF002492.1E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2569115IPR009057Homeodomain-like
CDDcd001679.96E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRCPCCSKE GLNKGAWTAQ EDKILTDYIK THGEGKWRTL SQSTGLKRCG KSCRLRWLNY  60
LRPDIKRGNF SDQEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT YLVKKFQESS  120
AKNQRAKSMR SEEPVLEEKA KPSPAEEFIV VRTKASRRTG LVAPPARAAP EAPTTELTTE  180
PMGNYNESMA NDTEPTSFKA PILMDFDMED FSIDNEILKS YGEFLLQNKD DEIDTLSLSS  240
QKTLSFDSGE WVGEEFEGEH FSQDLYSLGY FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849642.10.0transcription repressor MYB6
TrEMBLW1PT620.0W1PT62_AMBTC; Uncharacterized protein
STRINGERN112230.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-63myb domain protein 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]