PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00024.222 | ||||||||
Common Name | AMTR_s00024p00224470, LOC18439414 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 31041.9 Da PI: 5.3101 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l d++k +G g W+t ++ g++R++k+c++rw++yl evm_27.model.AmTr_v1.0_scaffold00024.222 14 KGAWTAQEDKILTDYIKTHGEGKWRTLSQSTGLKRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.4e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl evm_27.model.AmTr_v1.0_scaffold00024.222 67 RGNFSDQEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112 89********************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.41 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.75E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.156 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.96E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGRCPCCSKE GLNKGAWTAQ EDKILTDYIK THGEGKWRTL SQSTGLKRCG KSCRLRWLNY 60 LRPDIKRGNF SDQEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT YLVKKFQESS 120 AKNQRAKSMR SEEPVLEEKA KPSPAEEFIV VRTKASRRTG LVAPPARAAP EAPTTELTTE 180 PMGNYNESMA NDTEPTSFKA PILMDFDMED FSIDNEILKS YGEFLLQNKD DEIDTLSLSS 240 QKTLSFDSGE WVGEEFEGEH FSQDLYSLGY FL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006849642.1 | 0.0 | transcription repressor MYB6 | ||||
TrEMBL | W1PT62 | 0.0 | W1PT62_AMBTC; Uncharacterized protein | ||||
STRING | ERN11223 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 3e-63 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00024.222 |
Entrez Gene | 18439414 |
Publications ? help Back to Top | |||
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