PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00023.51 | ||||||||
Common Name | AMTR_s00023p00102530, LOC18423499 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | WRKY | ||||||||
Protein Properties | Length: 579aa MW: 64037.5 Da PI: 8.0155 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.6 | 2.5e-33 | 249 | 306 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k evm_27.model.AmTr_v1.0_scaffold00023.51 249 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 306 8****************************************.***************85 PP | |||||||
2 | WRKY | 104.9 | 4.4e-33 | 418 | 476 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct gCpv+k+ver+++d+++v++tYeg+Hnh+ evm_27.model.AmTr_v1.0_scaffold00023.51 418 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNVGCPVRKHVERASHDTRAVITTYEGKHNHD 476 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.4E-29 | 239 | 307 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-25 | 242 | 307 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-36 | 248 | 306 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 249 | 305 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.824 | 249 | 307 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-37 | 403 | 478 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-29 | 410 | 478 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.446 | 413 | 478 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-39 | 418 | 477 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 419 | 476 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010508 | Biological Process | positive regulation of autophagy | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MAMPEPLETP SSSHNPFSSL FWNQQDMDVS HSSFSDLLAG DFNIGSPERR IPASSRPIPS 60 GSFAERFMAR REGGIPRFKT NPPPSLPLSN SSSPSPSPSP SSYLSIPSGL SPATLLDSPV 120 LLSGSNVLQS PTTGSFPAHL YNWNGNSVSN SNGAFSNKQN VKREEGNYSD FTFQPHTRPA 180 TMDQGMKSES RPWSYSQPNK ESERTPLKPE TLAPIQQNHS QIPTLEPSEF HSDSSQALQQ 240 VIRDHRRSDD GYNWRKYGQK QVKGSENPRS YYKCTYPNCP TKKKVERSLD GQITEIVYKG 300 SHNHPKPQST RRNGSLSQTT GPTIGGAPSM NIEDPSFAGR GTPVESGTPE NSSISGGDDE 360 FEGGSRLNQS IGDEMDDEEP DAKRWRRENE YEGVSAPGSR TVREPRVVVQ TTSDIDILDD 420 GYRWRKYGQK VVKGNPNPRS YYKCTNVGCP VRKHVERASH DTRAVITTYE GKHNHDVPAA 480 RGSNSVVNRP STGNVIQPTI RPSATFRPNN SMPSNNMYGQ APFTLEMLQN QENRGFPSGY 540 GSLAPSSFMG RIQELERGFQ KAKEEPKEEL YLDDGMLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-36 | 249 | 479 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 7e-36 | 249 | 479 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00299 | DAP | Transfer from AT2G38470 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006828163.1 | 0.0 | probable WRKY transcription factor 26 isoform X2 | ||||
Swissprot | Q6B6R4 | 1e-128 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
TrEMBL | W1NK23 | 0.0 | W1NK23_AMBTC; Uncharacterized protein | ||||
STRING | ERM95579 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-118 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00023.51 |
Entrez Gene | 18423499 |
Publications ? help Back to Top | |||
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