PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00023.51
Common NameAMTR_s00023p00102530, LOC18423499
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 579aa    MW: 64037.5 Da    PI: 8.0155
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00023.51genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.5e-33249306260
                                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                              dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  evm_27.model.AmTr_v1.0_scaffold00023.51 249 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 306
                                              8****************************************.***************85 PP

2WRKY104.94.4e-33418476159
                                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                              ldDgy+WrKYGqK+vkg+++prsYY+Ct  gCpv+k+ver+++d+++v++tYeg+Hnh+
  evm_27.model.AmTr_v1.0_scaffold00023.51 418 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNVGCPVRKHVERASHDTRAVITTYEGKHNHD 476
                                              59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-29239307IPR003657WRKY domain
SuperFamilySSF1182901.24E-25242307IPR003657WRKY domain
SMARTSM007741.3E-36248306IPR003657WRKY domain
PfamPF031061.2E-25249305IPR003657WRKY domain
PROSITE profilePS5081123.824249307IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-37403478IPR003657WRKY domain
SuperFamilySSF1182903.27E-29410478IPR003657WRKY domain
PROSITE profilePS5081138.446413478IPR003657WRKY domain
SMARTSM007743.8E-39418477IPR003657WRKY domain
PfamPF031061.7E-25419476IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAMPEPLETP SSSHNPFSSL FWNQQDMDVS HSSFSDLLAG DFNIGSPERR IPASSRPIPS  60
GSFAERFMAR REGGIPRFKT NPPPSLPLSN SSSPSPSPSP SSYLSIPSGL SPATLLDSPV  120
LLSGSNVLQS PTTGSFPAHL YNWNGNSVSN SNGAFSNKQN VKREEGNYSD FTFQPHTRPA  180
TMDQGMKSES RPWSYSQPNK ESERTPLKPE TLAPIQQNHS QIPTLEPSEF HSDSSQALQQ  240
VIRDHRRSDD GYNWRKYGQK QVKGSENPRS YYKCTYPNCP TKKKVERSLD GQITEIVYKG  300
SHNHPKPQST RRNGSLSQTT GPTIGGAPSM NIEDPSFAGR GTPVESGTPE NSSISGGDDE  360
FEGGSRLNQS IGDEMDDEEP DAKRWRRENE YEGVSAPGSR TVREPRVVVQ TTSDIDILDD  420
GYRWRKYGQK VVKGNPNPRS YYKCTNVGCP VRKHVERASH DTRAVITTYE GKHNHDVPAA  480
RGSNSVVNRP STGNVIQPTI RPSATFRPNN SMPSNNMYGQ APFTLEMLQN QENRGFPSGY  540
GSLAPSSFMG RIQELERGFQ KAKEEPKEEL YLDDGMLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-36249479878Probable WRKY transcription factor 4
2lex_A7e-36249479878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828163.10.0probable WRKY transcription factor 26 isoform X2
SwissprotQ6B6R41e-128WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLW1NK230.0W1NK23_AMBTC; Uncharacterized protein
STRINGERM955790.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-118WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]