PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00023.197

Common Name

AMTR_s00023p00237480

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB_related

Protein Properties

Length: 242aa MW: 27133.7 Da PI: 10.122

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00023.197	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.1	1.7e-12	31	74	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE++++++a +++ + Wk+I + +g +t q++s+ qky evm_27.model.AmTr_v1.0_scaffold00023.197 31 EIWTGEEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 74 56***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-17	25	80	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.061	25	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-7	27	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-18	28	77	IPR006447	Myb domain, plants
SMART	SM00717	6.8E-10	29	77	IPR001005	SANT/Myb domain
CDD	cd00167	1.97E-8	33	75	No hit	No description
Pfam	PF00249	7.2E-10	33	74	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MALSALDSSV TFSGDGVKKI RKLYTTTKSR EIWTGEEHDK FLEALQLFDR DWKKIEAFVG 60 SKTVIQIRSH AQKYFLKVQK NGTSQHVPPP RLKRKVAHPY PRKASKNGHN SDLMPVHVFQ 120 AFSPALGRDH PGYVQQEASS SSHVKTAQTS PGSVSKCHFD GFRSRQSTWS DCGTSDPGNQ 180 SSSLQGTLDF SQVYSFIGGI FDPHVSGHLQ KLKEMDSVNV ETVLLLMRNL FINLSNLNFK 240 EH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020530841.1	0.0	protein REVEILLE 8 isoform X3
Swissprot	Q8RWU3	2e-82	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	W1NKM0	1e-180	W1NKM0_AMBTC; Uncharacterized protein (Fragment)
STRING	ERM95725	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP928	15	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	1e-84	MYB_related family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00023.197

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]