PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.393
Common NameAMTR_s00022p00252530, LOC18439996
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 353aa    MW: 38913 Da    PI: 4.8381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.393genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.6e-143885148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00022.393 38 KGLWSPEEDEKLMRYMMGNGQGCWSDVARNAGLQRCGKSCRLRWINYL 85
                                              678*******************************************97 PP
2Myb_DNA-binding51.42.5e-1691134146
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                               rg+++++E+el+v+++  lG++ W+ Ia +++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00022.393  91 RGAFSPQEEELIVHLHSILGNR-WSQIAMRLP-GRTDNEIKNFWNS 134
                                               89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-233188IPR009057Homeodomain-like
PROSITE profilePS5129417.1753385IPR017930Myb domain
SuperFamilySSF466891.13E-2735132IPR009057Homeodomain-like
SMARTSM007171.6E-103787IPR001005SANT/Myb domain
PfamPF002493.2E-133885IPR001005SANT/Myb domain
CDDcd001675.51E-94185No hitNo description
PROSITE profilePS5129425.43886140IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2589141IPR009057Homeodomain-like
SMARTSM007171.1E-1590138IPR001005SANT/Myb domain
PfamPF002492.3E-1491134IPR001005SANT/Myb domain
CDDcd001674.34E-1193133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRKPDSPAKV CNNINNNGNS NTNGNSNNNN NSNKRLRKGL WSPEEDEKLM RYMMGNGQGC  60
WSDVARNAGL QRCGKSCRLR WINYLRPDLK RGAFSPQEEE LIVHLHSILG NRWSQIAMRL  120
PGRTDNEIKN FWNSTIKKRL KSNQSAPAKP ESPQAGLMAM HDSNTSMHDC DMAMAMAMTM  180
CMESLSSSLS SSSSSSSMPS TCNRTSQSAG VENCYGMTGL AGYFQMPTCL NDLGFDNGVL  240
EVGQMGDGDL SLEGDLFVPS LESISLDEDI NNNHENDSNN NTKNNSNNYD NITNSNYSIV  300
NCNANSNNLG NNCESLNNGN YWGGEMRMGE WGLEDIVGGS SFSFPYLDFQ LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27361425110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850213.10.0transcription factor MYB46
TrEMBLW1PVE40.0W1PVE4_AMBTC; Uncharacterized protein
STRINGERN117940.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-67myb domain protein 46
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]