PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00022.382 | ||||||||
Common Name | AMTR_s00022p00250320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 31594.2 Da PI: 5.4157 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.4e-19 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a+++l+g evm_27.model.AmTr_v1.0_scaffold00022.382 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAALAYDEAARRLYG 78 69****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.54E-33 | 28 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-31 | 29 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-13 | 29 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-37 | 29 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.51 | 29 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-21 | 29 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MESCRKNLMK TCKKGPTRGK GGPQNSSCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFS 60 TAEEAALAYD EAARRLYGPE AHLNLPHIHS NPHSLQKTLS VNWFSSKNFG SNYHSYGVLN 120 LNAQPNVHVI HQRLQEMKKN VNQPPPVSCP LVFSEKGKVN SGPEIEREEK DGLENYGFSA 180 QEKQIDLKEF LEQLGVLKDE QLGVLKEESG SDSSATPPQQ ILLGNNFPAI SETGELDGQD 240 FLWDELEELN GFDHNTDDQT CTIQIEGHED ICLTSSIWDL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 30 | 86 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020526280.1 | 0.0 | dehydration-responsive element-binding protein 2F | ||||
TrEMBL | W1PUP9 | 0.0 | W1PUP9_AMBTC; Uncharacterized protein | ||||
STRING | ERN11783 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 2e-53 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00022.382 |
Publications ? help Back to Top | |||
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