PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00022.332 | ||||||||
Common Name | AMTR_s00022p00238000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | AP2 | ||||||||
Protein Properties | Length: 329aa MW: 36013.8 Da PI: 9.7006 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.9 | 2.1e-07 | 292 | 324 | 1 | 36 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 s y+GV+++++ grW A+I + +k +lg+f evm_27.model.AmTr_v1.0_scaffold00022.332 292 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTF 324 57****************988532...5*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.2E-5 | 162 | 263 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.128 | 162 | 257 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-8 | 221 | 259 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-8 | 227 | 258 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-6 | 292 | 326 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 9.427 | 293 | 328 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.016 | 293 | 326 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-4 | 293 | 325 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MPAEDTTDPF APSTSTFNDL NSGSSNMDTK RGPKLEDFLG GVTFRESGTD ALTSGIFRPI 60 QPSQSFSGEY STQKAIGLSM IKSWLRENPA KEVTGNLNNN LQSLTLSMGT GSSPGVNGEN 120 AASSSSMESE RNRPPPLDSQ TGAVEAVNVR KPVDNFGQRT SIYRGVTSVG TDGRVDMKHI 180 FGTTVAGERA KPERDAKFQK KSNFSTGLWP ESENSRSDSG KSDRDLDGGY DKEEKAARAY 240 DLAALKYWGT TTTTNFPISN YEKELEEMKH MTRQEYVASL RRKSSGFSRG ASIYRGVTRH 300 HQHGRWQARI GRVAGNKDLY LGTFSKFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011625525.1 | 1e-179 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q8LSN2 | 9e-75 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | W1PUK4 | 0.0 | W1PUK4_AMBTC; Uncharacterized protein | ||||
STRING | ERN11733 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 5e-69 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00022.332 |
Publications ? help Back to Top | |||
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