PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.228
Common NameAMTR_s00022p00198330, LOC18439828
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SBP
Protein Properties Length: 352aa    MW: 38376.3 Da    PI: 9.1167
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.228genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1361.2e-4254129277
                                               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT--- CS
                                       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhn 70 
                                               CqvegC+adl+ ak y+ rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hn
  evm_27.model.AmTr_v1.0_scaffold00022.228  54 CQVEGCKADLTGAKPYYCRHKVCGAHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHN 122
                                               ********************************************************************* PP

                                               ----S-- CS
                                       SBP  71 errrkkq 77 
                                               errrk+ 
  evm_27.model.AmTr_v1.0_scaffold00022.228 123 ERRRKPP 129
                                               *****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-3546115IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.02651128IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-4052133IPR004333Transcription factor, SBP-box
PfamPF031101.4E-3254127IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDYETMNGLK LGKRIYFEDV GSGNPAKKPP ENGNPSTSSR KTRVSGQNGQ PPSCQVEGCK  60
ADLTGAKPYY CRHKVCGAHS KSPKVIVAGL EQRFCQQCSR FHQLPEFDQG KRSCRRRLAG  120
HNERRRKPPP STLSARYGRF PSSLYGDSRH GGFVMDFSHP KPLGKDIWPT IKVSDRIPFA  180
TPQMPPLKSL THHHPWHSNT STTTIETPIN GGGEILTQGI HTYLQQGSTV GPTFSGHGAL  240
PSECSSFPRM SDSGCALSLL STHQPWGAKV LGPGPPLDSI INEEGPLDTQ VAPLNLCSSL  300
SQGPMAPDQN GPPYSGELEL LQHNRQFVDL AHLKSSYGHV TSNQHLMQWG L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-31541271184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850048.10.0squamosa promoter-binding-like protein 14
TrEMBLW1PUX80.0W1PUX8_AMBTC; Uncharacterized protein
STRINGERN116290.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-53squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]