PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00022.209

Common Name

AMTR_s00022p00190540

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

G2-like

Protein Properties

Length: 411aa MW: 45972.3 Da PI: 7.3651

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.209	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.4	2.4e-31	230	284	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLHe+Fve v++LGG+ kAtPk+il+ m+ +gLt++hvkSHLQkYR+ evm_27.model.AmTr_v1.0_scaffold00022.209 230 KTRMRWTQELHEKFVESVNRLGGAGKATPKAILQQMGSEGLTIYHVKSHLQKYRS 284 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-28	227	285	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.503	227	287	IPR017930	Myb domain
SuperFamily	SSF46689	1.4E-16	228	284	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-23	230	285	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-10	232	283	IPR001005	SANT/Myb domain
Pfam	PF14379	7.2E-23	312	358	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MNSQKIECPE ENFPASNNYS FFSPQINIKQ GNSQSPDAFS FSNGSLAPPP VTHQLPCSFS 60 SSNYFGLLPF SRYTNDRLMG FSHYDSLSPT PTKNSLGGSL PQFSVDSRKE TNNNIGSFDN 120 SQYVMGFPLL GEHCVKTTSY CNLNQQKDSK RSEFYPSLPI DGSDVDVSLP RRHLLAIEGI 180 QNCLGNLQSS NCSTTELAFQ NQQERCFSSC HVGTSVASTH VTCGVGASNK TRMRWTQELH 240 EKFVESVNRL GGAGKATPKA ILQQMGSEGL TIYHVKSHLQ KYRSAKYLPD AAEGKLERKT 300 TNDIRHDLKT GIQITEALRM QMDVQRRLHE QLEIQRKLQL QIEEHGKYLQ KMVDQQQKRS 360 ENLFGSHNIN VLYSEKQPIN LAGVIESSFD DELLDKTPSR FSLGDGQSHE *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MNSQKIECPE ENFPASNNYS FFSPQINIKQ GNSQSPDAFS FSNGSLAPPP VTHQLPCSFS  60
SSNYFGLLPF SRYTNDRLMG FSHYDSLSPT PTKNSLGGSL PQFSVDSRKE TNNNIGSFDN  120
SQYVMGFPLL GEHCVKTTSY CNLNQQKDSK RSEFYPSLPI DGSDVDVSLP RRHLLAIEGI  180
QNCLGNLQSS NCSTTELAFQ NQQERCFSSC HVGTSVASTH VTCGVGASNK TRMRWTQELH  240
EKFVESVNRL GGAGKATPKA ILQQMGSEGL TIYHVKSHLQ KYRSAKYLPD AAEGKLERKT  300
TNDIRHDLKT GIQITEALRM QMDVQRRLHE QLEIQRKLQL QIEEHGKYLQ KMVDQQQKRS  360
ENLFGSHNIN VLYSEKQPIN LAGVIESSFD DELLDKTPSR FSLGDGQSHE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-24	230	287	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-24	230	287	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-24	230	287	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-24	230	287	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	230	287	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020526476.1	0.0	uncharacterized protein LOC18439809 isoform X3
TrEMBL	W1PWA8	0.0	W1PWA8_AMBTC; Uncharacterized protein
STRING	ERN11610	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-59	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00022.209

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]