PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.192
Common NameAMTR_s00022p00181220
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 402aa    MW: 44563.4 Da    PI: 5.6381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.192genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09855344
                                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHH CS
                           Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrw 44
                                              +W t+E++ll+ a++++G+ +W+ +a +++        +t+ +cksr+
  evm_27.model.AmTr_v1.0_scaffold00022.192  8 KWGTWEELLLAYAINRHGTCQWENVAMELQnrtcdsIYLTPDDCKSRF 55
                                              8*****************************777777556888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.8E-5561IPR001005SANT/Myb domain
PROSITE profilePS500906.098659IPR017877Myb-like domain
SuperFamilySSF466894.24E-5657IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-5660IPR009057Homeodomain-like
PfamPF002492.3E-8757IPR001005SANT/Myb domain
CDDcd001674.74E-6855No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGGGEKAKWG TWEELLLAYA INRHGTCQWE NVAMELQNRT CDSIYLTPDD CKSRFEDLSR  60
RFTAGEKSPR IKGSPENFSE NGENTPENEK NPPGNEIPWL EDLRKLRVAE LRREVERYDV  120
SIVSLQQKVK KLKEERERSS KESENGDPIT DLEKEKQEEA ISPENNNEEK ENRNERDQND  180
AAMADSSLKN HAKASQESPL NQSFNESNST RSEAFVKEAK AEPESGTGKP DPAPAKSPGK  240
DGGLPGKATD PSSPHDSYNG SSETIPRNQS QKVMGKFPGE VEAYSDAESK GKDAGKETTE  300
NSDVLSSVSL SRKRLRKNFP ASSSGDELCT DEIFPANKVA GKLLPLLRCL KNIRCHKYGA  360
VFKHRLESQC GRVVSIVRLV HRMVGILGEL DRSGPSICLA E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625509.10.0SWR1 complex bromodomain subunit bdf1
TrEMBLW1PU530.0W1PU53_AMBTC; Uncharacterized protein
STRINGERN115930.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.16e-16DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]