PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.187
Common NameAMTR_s00022p00176740, LOC18439786
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 301aa    MW: 30629.3 Da    PI: 9.6043
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.187genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.4e-064366225
                                              -S---SGGGGTS--TTTTT-SS-S CS
                                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                                              k ++C  f+ t  C++G++C+F H
  evm_27.model.AmTr_v1.0_scaffold00022.187 43 KSKPCTKFFSTTGCPFGESCHFLH 66
                                              678999999999************ PP
2zf-CCCH20.48.8e-07104129227
                                               -S---SGGGGTS--TTTTT-SS-SSS CS
                                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                               k + C +f     C++G++C+FaH++
  evm_27.model.AmTr_v1.0_scaffold00022.187 104 KSRMCANFNTPEGCRFGEKCHFAHSE 129
                                               567899999999************95 PP
3zf-CCCH38.61.9e-12268292126
                                               --S---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                               ykt+lC +fa+ G C +GdrC+FaHg
  evm_27.model.AmTr_v1.0_scaffold00022.187 268 YKTKLCENFAK-GSCTFGDRCHFAHG 292
                                               9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.624168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7184169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-64269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-74366IPR000571Zinc finger, CCCH-type
PfamPF146080.964966No hitNo description
PROSITE profilePS5010313.225102130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7103134IPR000571Zinc finger, CCCH-type
SMARTSM003561.1104129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-12104135IPR000571Zinc finger, CCCH-type
PfamPF146080.11108127No hitNo description
SuperFamilySSF547911.14E-13154226IPR004088K Homology domain, type 1
SMARTSM003225.4E-10155225IPR004087K Homology domain
PROSITE profilePS5008413.439156220IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.4E-15158225IPR004088K Homology domain, type 1
CDDcd001051.77E-12160220No hitNo description
PfamPF000134.0E-10160222IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.5E-16266298IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-8267293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.159267294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-9267298IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10268292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDPVEPPRKK PRGDASSNGN GGFKRSNQHF GAYTEKETGL GSKSKPCTKF FSTTGCPFGE  60
SCHFLHYVPG VNVVAQLRQT LGGPLAPSRF GTGPPDPQAL GPIKSRMCAN FNTPEGCRFG  120
EKCHFAHSER ELNRPPLGAS PTGRRFEPSG LGFGASANAK ISVDASLAGA IIGKGGVNSK  180
HICRVTGAKL AIREHESDPN LRNIELEGSF DQINQASVMV RELIASVGGP GGGGAPAGAM  240
AKGFGGGGGG GGGGGGGGGG GGGGGNNYKT KLCENFAKGS CTFGDRCHFA HGASELRKQV  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850007.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ7F8R09e-92C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLW1PU480.0W1PU48_AMBTC; Uncharacterized protein
STRINGERN115880.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-69C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]