PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00021.30
Common NameAMTR_s00021p00065350
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 264aa    MW: 29565.6 Da    PI: 9.8092
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.30genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.81.1e-1632122186
                                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf....erspkqCkekwenlnkrykki 64 
                                              +W++  + +Li+a  e+  +l+rg+lk+++W+ev++++  r +g     +r+ +qCk++++ l+k+yk +
  evm_27.model.AmTr_v1.0_scaffold00021.30  32 CWSEGATVTLIDAWGERYLELNRGNLKQKHWQEVADAVnsR-HGSvsrpRRTDVQCKNRLDTLKKKYKLE 100
                                              7*************************************952.443344478******************* PP

                                 trihelix  65 kegekkrtsessstcpyfdqle 86 
                                              k+++++     +s++p+fd+l+
  evm_27.model.AmTr_v1.0_scaffold00021.30 101 KARASESDGSFQSKWPFFDRLH 122
                                              *****99999999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.0E-2730124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEEPEPASAT HTVMTATVYR PSPSSTSTRE DCWSEGATVT LIDAWGERYL ELNRGNLKQK  60
HWQEVADAVN SRHGSVSRPR RTDVQCKNRL DTLKKKYKLE KARASESDGS FQSKWPFFDR  120
LHNLLGPSKK ASPPPLAVVH PYHQIPQAVP LVIRPVKEKR PLPCSAGGGV PEDSNLVNGD  180
SGSSESGDIG VEDGVKELAK AIARFGEIYE RVEMQKQRQM MELEKQRMEF SKAVEYQRMQ  240
TFMEVQLKLP KMKKAKRQGA SGT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852424.20.0trihelix transcription factor ASIL2
SwissprotQ9LJG86e-40ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLW1Q0G10.0W1Q0G1_AMBTC; Uncharacterized protein
STRINGERN138910.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-54sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]