PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00021.214 | ||||||||
Common Name | AMTR_s00021p00223240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 24561.7 Da PI: 6.2831 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.8e-18 | 56 | 106 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa a++ a+++l+g evm_27.model.AmTr_v1.0_scaffold00021.214 56 PVFRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPTAEMAAHAYDVAALNLKG 106 579****887.**********843...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-12 | 56 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-35 | 57 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.131 | 57 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-32 | 57 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-21 | 57 | 115 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.36E-29 | 58 | 116 | No hit | No description |
PRINTS | PR00367 | 2.1E-12 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-12 | 96 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEEEPSSPYP QIRVSGSTPC RQKPAAEMTH CVETRPAEET PSRKIAAEKG GGTRHPVFRG 60 VRKRRWGKWV SEIREPRKKS RIWLGSFPTA EMAAHAYDVA ALNLKGRKAA LNFPENADTL 120 PRLATCSARD IQAAAAAAAA AAESCSEAEI SPKSEVSTAG TEDDFWGELP ALWKNGEIFS 180 APEISDFVSE FFGEGFISGI CGATEGDSAA QLVPPACCGL LRASSPPLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 49 | 115 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006852608.3 | 1e-166 | ethylene-responsive transcription factor ERF023 | ||||
Swissprot | Q1ECI2 | 1e-41 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | W1Q123 | 1e-164 | W1Q123_AMBTC; Uncharacterized protein | ||||
STRING | ERN14075 | 1e-165 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 2e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00021.214 |
Publications ? help Back to Top | |||
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