PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00021.149 | ||||||||
Common Name | AMTR_s00021p00189010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | WOX | ||||||||
Protein Properties | Length: 347aa MW: 38466.4 Da PI: 8.8856 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.8e-18 | 45 | 105 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p +ee++++ ++l ++ +++V++WFqNr+ + k+ evm_27.model.AmTr_v1.0_scaffold00021.149 45 KPRWNPKPEQIRILEAIFNSgMVNPPREEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 105 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 112.6 | 2.1e-36 | 44 | 107 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P++eei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k+ evm_27.model.AmTr_v1.0_scaffold00021.149 44 PKPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKH 107 689**********************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.689 | 41 | 106 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-13 | 41 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-9 | 43 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-7 | 44 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.03E-8 | 44 | 107 | No hit | No description |
Pfam | PF00046 | 7.6E-16 | 45 | 105 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPCNQW QHDINSPLIC QKPPFTAEER SPEPKPRWNP KPEQIRILEA 60 IFNSGMVNPP REEIRRIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKHKQL HQSSAKPATP 120 SPPTVPNQNY QPTPQSSQTP NSSSSSSEKS EASPVQLGSI KPGATVNVME GLNAANSPTC 180 SVNQVAYLGS QPEPSPLFFQ TESGCEMSAF SELANMLQQQ EKMKMGHIAM NDILNGVGEG 240 TANSNGCSGG GGRVTVFINE MAFEVGAGGR VNVREAFGEA MLIHSSGHPV PTNEWGFTLQ 300 PLQHGHFYYL VPYLPYYQTL TLILPIVSLH HVSYHGEKKK KAIFFY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM882147 | 2e-66 | FM882147.1 Amborella trichopoda partial wox9 gene for putative wuschel homeobox protein WOX9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006852543.2 | 0.0 | WUSCHEL-related homeobox 9 isoform X1 | ||||
TrEMBL | W1Q110 | 0.0 | W1Q110_AMBTC; Uncharacterized protein | ||||
STRING | ERN14010 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6103 | 12 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 4e-61 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00021.149 |
Publications ? help Back to Top | |||
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