PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00021.142 | ||||||||
Common Name | AMTR_s00021p00184450, LOC18442251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 264aa MW: 29980.5 Da PI: 4.6472 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5e-20 | 124 | 174 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrd + + +r++lg+f+taeeAa a+++a+++++g evm_27.model.AmTr_v1.0_scaffold00021.142 124 RYRGVRKRP-WGKYAAEIRDSTR---HgARVWLGTFDTAEEAAMAYDKAALSMRG 174 7********.**********422...25*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.2E-31 | 124 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-14 | 124 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 124 | 184 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-36 | 124 | 188 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-28 | 124 | 182 | No hit | No description |
PROSITE profile | PS51032 | 23.433 | 124 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MAIGMDYSPK LEDMLLENIW ASFIAGNPEN RNTENPTNSH VSTHSWGELP ALTQTNGCQD 60 ILERLPRLGR WISMGSENWD DLLDGISLET KNGNCSAVQP EEERNTEVSK PKAMVEKERE 120 AERRYRGVRK RPWGKYAAEI RDSTRHGARV WLGTFDTAEE AAMAYDKAAL SMRGPRTFLN 180 FPLEMVHQAL SRTEKPVCHD SKLGFRDRRE EQQVEDMAMV QTPWKKGFDS MAPDEGLWEN 240 TDVVELQDLG NDYLESLLAS LCE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-27 | 124 | 184 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006852536.2 | 0.0 | ethylene-responsive transcription factor 15 | ||||
TrEMBL | W1PZW9 | 0.0 | W1PZW9_AMBTC; Uncharacterized protein | ||||
STRING | ERN14003 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-24 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00021.142 |
Entrez Gene | 18442251 |
Publications ? help Back to Top | |||
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