PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00019.328 | ||||||||
Common Name | AMTR_s00019p00235390, LOC18435579 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | SBP | ||||||||
Protein Properties | Length: 249aa MW: 27548.9 Da PI: 10.3931 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.7 | 1e-40 | 40 | 115 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakh 69 +Cq+egC +dl++ak+yhrrhkvCe+hska+ v+++gleqrfCqqCsrfh l efDe krsCrrrLa+h evm_27.model.AmTr_v1.0_scaffold00019.328 40 RCQAEGCGNDLTNAKHYHRRHKVCEFHSKATRVIANGLEQRFCQQCSRFHVLAEFDEVKRSCRRRLADH 108 6******************************************************************** PP -----S- CS SBP 70 nerrrkk 76 n+rrrk+ evm_27.model.AmTr_v1.0_scaffold00019.328 109 NRRRRKN 115 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.9E-34 | 37 | 102 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.505 | 38 | 115 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.57E-38 | 39 | 119 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-30 | 41 | 114 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MRSNGLGLNL GQRTYFSSSD GGVIVRRNSR GLFGGPVVPR CQAEGCGNDL TNAKHYHRRH 60 KVCEFHSKAT RVIANGLEQR FCQQCSRFHV LAEFDEVKRS CRRRLADHNR RRRKNGSDKL 120 GDATKNSIVS KAIVGSVSKL ETESPQKATA SAPLSLSQES ATFAEEAHHL FQFQSILLPN 180 KNSNLKTTRL PYASSSPIQN LLFNESTGFR ADNGLLSHHS FTTQQEDDQK GEVQGLANLG 240 HSIFKVQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-30 | 31 | 114 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006845685.2 | 0.0 | squamosa promoter-binding-like protein 8 | ||||
TrEMBL | W1PJT4 | 0.0 | W1PJT4_AMBTC; Uncharacterized protein | ||||
STRING | ERN07360 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-41 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00019.328 |
Entrez Gene | 18435579 |
Publications ? help Back to Top | |||
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