PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00019.259 | ||||||||
Common Name | AMTR_s00019p00212840, LOC18435509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 18242.2 Da PI: 8.7425 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H evm_27.model.AmTr_v1.0_scaffold00019.259 38 FPCNYCHRKFYSSQALGGHQNAH 60 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.15E-6 | 35 | 65 | No hit | No description |
PROSITE profile | PS50157 | 10.928 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MEEHFNPETT IIRKSSPPPS LSLELGLEQP YDLEPRVFPC NYCHRKFYSS QALGGHQNAH 60 KLERSLVKRA QRSSSALGGS GDSGSSGLGL GLRPHSMAQE VSGSRNWPQR IEPTGSRHAS 120 VGTLEEGFGV DGRREKVGFG SSEGERSWRN GGGTREDVPK LDLSLRL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006845616.2 | 1e-118 | zinc finger protein 2 | ||||
TrEMBL | W1PI41 | 1e-117 | W1PI41_AMBTC; Uncharacterized protein | ||||
STRING | ERN07291 | 1e-118 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 1e-17 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00019.259 |
Entrez Gene | 18435509 |
Publications ? help Back to Top | |||
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