PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00019.250
Common NameAMTR_s00019p00208460, LOC18435500
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ARR-B
Protein Properties Length: 624aa    MW: 68517.9 Da    PI: 5.3773
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.250genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.41.5e-23201254155
                                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                               +pr+ Wt+eL ++F  av++L G+ekA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  evm_27.model.AmTr_v1.0_scaffold00019.250 201 RPRVIWTSELRQKFEAAVHHL-GIEKAVPKKILDLMNVPWLTRENVASHLQKYRL 254
                                               59*******************.********************************8 PP
2Response_reg75.61.9e-25211291109
                                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHH CS
                              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeire 67 
                                               vl vdD+p+ ++ll+ +l++ +y +v+ + ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+  + 
  evm_27.model.AmTr_v1.0_scaffold00019.250  21 VLAVDDDPTCLKLLEGLLRRCEY-KVTITGHAITALKLLREKKgeFDLVISDVHMPDMDGFKLLELVKM 88 
                                               799********************.***************999999*******************98887 PP

                                               HTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                              Response_reg  68 eepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                               e  +lp+i+v+ +g+ + + + ++ Ga+d+l Kp+  e l +
  evm_27.model.AmTr_v1.0_scaffold00019.250  89 EM-NLPVIMVSVNGDTNAVMKGINCGARDYLLKPVRFEVLKN 129
                                               55.*******************************99988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.83E-3418137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.7E-3818155No hitNo description
SMARTSM004482.8E-3019131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.84920135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2221129IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.86E-2622135No hitNo description
SuperFamilySSF466892.15E-17199258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-26200258IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-22202254IPR006447Myb domain, plants
PfamPF002491.9E-5206253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MLPESGRESG RESDFPAGLR VLAVDDDPTC LKLLEGLLRR CEYKVTITGH AITALKLLRE  60
KKGEFDLVIS DVHMPDMDGF KLLELVKMEM NLPVIMVSVN GDTNAVMKGI NCGARDYLLK  120
PVRFEVLKNI WQHVIRKGKI AHGDSNNHGD DDNRRNCGMD DSKGTSTINE IGSTKKHTDQ  180
NEREGDEGDD HDSEDPSALK RPRVIWTSEL RQKFEAAVHH LGIEKAVPKK ILDLMNVPWL  240
TRENVASHLQ KYRLSLKKRG SIQSHLYDMY SPLRGHGSSY FSLDSNGGFG GKRHNGALIS  300
FDAQNSLDRF NGCRGFGTDG FNPSRIIQFN CSQDMRSFGS YIRRPQRIPF PINQHDNGFP  360
AIIELNKLQQ MQDLPEFGDS NISIGSTVYV QQPLASISNF SGDTFTSNSC CIPDLLTTPF  420
MGNAQQQVEY DGLQGNSDKN IAFYDSCDSM QSGLLLIGSA PSQQSAGASV IGLDSSLIEA  480
GSSMLLSGFR DNDGFLPEES FESHKENSGA IISRSIDSFL PSHESVPPLG QSNLGACRAS  540
LDREITLLPN EGVSMFSKPG TGDPVMESNH MDLTNKFAGP SRLQSVLYPS DGGNSSNVLL  600
GMMQPEYSDK IFDDVSYPPG ACV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-24197258162ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845607.10.0two-component response regulator ORR24
RefseqXP_020523763.10.0two-component response regulator ORR24
RefseqXP_020523765.10.0two-component response regulator ORR24
SwissprotA2X1N21e-101ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-101ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLW1PBK00.0W1PBK0_AMBTC; Uncharacterized protein
STRINGERN072820.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.16e-84response regulator 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]