PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00019.235
Common NameAMTR_s00019p00201260, LOC18435485
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 331aa    MW: 37201.5 Da    PI: 6.1857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.235genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-151462148
                                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+W++eEd +l+  ++q G+g +W + ++++g++R++k+c++rw++yl
  evm_27.model.AmTr_v1.0_scaffold00019.235 14 KGPWSPEEDAKLKAFIEQQGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                                              79*********************************************97 PP
2Myb_DNA-binding37.27e-1269111246
                                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                               g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00019.235  69 GGFSEEEDRIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                               569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.563962IPR017930Myb domain
SuperFamilySSF466897.52E-2611109IPR009057Homeodomain-like
SMARTSM007171.5E-111364IPR001005SANT/Myb domain
PfamPF002497.7E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231569IPR009057Homeodomain-like
CDDcd001675.71E-81662No hitNo description
PROSITE profilePS5129421.44463117IPR017930Myb domain
SMARTSM007173.3E-1167115IPR001005SANT/Myb domain
PfamPF002491.8E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2370117IPR009057Homeodomain-like
CDDcd001671.05E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAFIE QQGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDRIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR  120
RKEQNSRRDS NADARNSPLM DSLSTSALER MQLHIQLQSL HHPLSLLSPS IWPRFPPLFD  180
GNSIENNKNT ARNFIPNDFA GNLIGKPPSN GKIGTETDER ENSTNGLSSP HSTRFNGDFI  240
SQEKPVANSG MSLEAIDGFL MEEGELQNGE TRGFLERETD RDGLDCFREM ESTSENLALW  300
VNDSESGSFN SWDTAYILGT EEYDLEHHLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845592.10.0transcription factor MYB36
SwissprotQ9FKL25e-95MYB36_ARATH; Transcription factor MYB36
TrEMBLW1PBI80.0W1PBI8_AMBTC; Uncharacterized protein
STRINGERN072670.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-81myb domain protein 36
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]