PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00017.97
Common NameAMTR_s00017p00182820
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ARF
Protein Properties Length: 605aa    MW: 67474 Da    PI: 6.0693
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00017.97genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.7e-24110209399
                                              EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
                                       B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                                              kvltpsd+++ g +++  + ae+      +++k+ +++l+++d +g+ W++++iyr++++r++lt+GW++
  evm_27.model.AmTr_v1.0_scaffold00017.97 110 KVLTPSDSNNGGSFSVLSQMAESVfpkldKSIKNPEQDLVMQDVHGKAWKFRHIYRGRPKRHLLTTGWSK 179
                                              89*******************999****9555556679******************************** PP

                                              HHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                       B3  68 FvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                              Fv++++L +gD+vvF   + +++ + v+++r+
  evm_27.model.AmTr_v1.0_scaffold00017.97 180 FVDEKRLASGDTVVFA--RGNDGMMSVGLRRR 209
                                              ****************..34899999999997 PP
2Auxin_resp41.36.6e-15228305182
                               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdld 70 
                                              aa+ a+++ +F+vvY+P    s F+v+++ v  al+ ++ +   ++m +e+    +  ++G v +vs +d
  evm_27.model.AmTr_v1.0_scaffold00017.97 228 AAEHAASGHPFQVVYYPNR-GSAFCVERHIVDMALELSWVPDVTIRMTVEG---VKGLVTGSVLSVSVVD 293
                                              688999***********97.689*************************997...456679********** PP

                               Auxin_resp  71 pvrWpnSkWrsL 82 
                                              p rWp+S+W +L
  evm_27.model.AmTr_v1.0_scaffold00017.97 294 PDRWPGSPWGLL 305
                                              *********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-25107214IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-15108210IPR003340B3 DNA binding domain
PROSITE profilePS5086312.619108210IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-32109210IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-21110209IPR003340B3 DNA binding domain
CDDcd100172.82E-16110208No hitNo description
PfamPF065072.4E-16228305IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MDSSSGTLVP ANLWRTFAGN TAKVPSPNSL VYYFPQGHAA QASSPPNFPN GPHFPPCIPC  60
LVYDVRLFAS HQTDEVFAVL SLVPDTFSIR EKPATTDFFA DLAEIDSHAK VLTPSDSNNG  120
GSFSVLSQMA ESVFPKLDKS IKNPEQDLVM QDVHGKAWKF RHIYRGRPKR HLLTTGWSKF  180
VDEKRLASGD TVVFARGNDG MMSVGLRRRA EVSQFRTHWL PPEDVVRAAE HAASGHPFQV  240
VYYPNRGSAF CVERHIVDMA LELSWVPDVT IRMTVEGVKG LVTGSVLSVS VVDPDRWPGS  300
PWGLLEVASD RSSTRRVNPW SVESMKVLSP LLYNEQDKPS TVAENEKFES LLGPQLSTYK  360
EHEMGLHIDK RQFKSNSSTT TIQEARQDPI IKALSSDSLD NQTCNKSTFC DNHSNQQNSF  420
GMPLMLPTLE CFSPQGYSNY QSQSDGNLPK KCDTELPGSG SNDVAIKSNI FKPSEKSRSM  480
VQPQETSNDK PEKEANVRLC KVFYNDIIGR SIDLSLFCSY EEFFGRLSHM FGKEISPLHS  540
LLFYDRPDGI QRSVGEEPYN ISLWEGLLKF FYEMLDVLGE VEGYASIMWH GVKNNGLEND  600
STGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-52132440389Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624395.20.0auxin response factor 16
RefseqXP_020524542.10.0auxin response factor 16
RefseqXP_020524543.10.0auxin response factor 16
RefseqXP_020524544.10.0auxin response factor 16
RefseqXP_020524545.10.0auxin response factor 16
TrEMBLW1PLH70.0W1PLH7_AMBTC; Auxin response factor
STRINGERN086190.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.17e-66auxin response factor 16
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]