PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00017.277
Common NameAMTR_s00017p00255350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 189aa    MW: 21612.1 Da    PI: 4.6717
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00017.277genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.21.5e-4471311127
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69 
                                               lppGfrF+Ptdeelv +yL +k+++++++  ++i+e+diyk++Pw+Lp+++  +e++wyfF++r++++ 
  evm_27.model.AmTr_v1.0_scaffold00017.277   7 LPPGFRFNPTDEELVLHYLIPKARHSTNTS-NIITEIDIYKFDPWQLPSEAMVGEQHWYFFCPRKRRQV 74 
                                               79************************9877.89***************8777899************** PP

                                       NAM  70 tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                               +g+r+nr + sgyW atg+d++vls +++ vgl+k   fy+g+ap+g+ t W+mhey 
  evm_27.model.AmTr_v1.0_scaffold00017.277  75 KGSRSNRPAISGYWMATGTDTPVLS-GSKRVGLRKDWEFYSGKAPRGSITYWTMHEYL 131
                                               *******8899**************.999****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-534152IPR003441NAC domain
PROSITE profilePS5100550.4927152IPR003441NAC domain
PfamPF023653.0E-228130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGDENNLPPG FRFNPTDEEL VLHYLIPKAR HSTNTSNIIT EIDIYKFDPW QLPSEAMVGE  60
QHWYFFCPRK RRQVKGSRSN RPAISGYWMA TGTDTPVLSG SKRVGLRKDW EFYSGKAPRG  120
SITYWTMHEY LIIDADDCTN SEDWVLCHVY DKSCCSSSGD EGRELSCMDE IYASLDDFDD  180
ITYPLQGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-52615816171NO APICAL MERISTEM PROTEIN
1ut4_B1e-52615816171NO APICAL MERISTEM PROTEIN
1ut7_A1e-52615816171NO APICAL MERISTEM PROTEIN
1ut7_B1e-52615816171NO APICAL MERISTEM PROTEIN
3swm_A1e-52615819174NAC domain-containing protein 19
3swm_B1e-52615819174NAC domain-containing protein 19
3swm_C1e-52615819174NAC domain-containing protein 19
3swm_D1e-52615819174NAC domain-containing protein 19
3swp_A1e-52615819174NAC domain-containing protein 19
3swp_B1e-52615819174NAC domain-containing protein 19
3swp_C1e-52615819174NAC domain-containing protein 19
3swp_D1e-52615819174NAC domain-containing protein 19
4dul_A1e-52615816171NAC domain-containing protein 19
4dul_B1e-52615816171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020524559.11e-141NAC transcription factor NAM-B2
SwissprotA0SPJ63e-57NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLW1PM051e-139W1PM05_AMBTC; Uncharacterized protein
STRINGERN087991e-140(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.14e-54NAC domain containing protein 3
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]