PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00017.219
Common NameAMTR_s00017p00242860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 199aa    MW: 22399.4 Da    PI: 9.3151
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00017.219genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.9e-18126159134
                                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                               Cs+C + kTp+WR gp g++tLCnaCG++y++ +
  evm_27.model.AmTr_v1.0_scaffold00017.219 126 CSHCLVEKTPQWRMGPMGPRTLCNACGVRYKSGR 159
                                               *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-16120170IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.688120156IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-15123184No hitNo description
Gene3DG3DSA:3.30.50.105.3E-14124157IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.28E-14125173No hitNo description
PROSITE patternPS003440126151IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15126159IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAYPIVLDMD WVGGSFGIEN ILNFSNEEMA QLCEYDEEAV ERETTQQQQG TTPSPNSAQS  60
SGEPIFPPVE LLQAESGPQK PWRRPRSKRP RPAPRVWTLS PQEIGSPGKG FPAKKWPERE  120
APARRCSHCL VEKTPQWRMG PMGPRTLCNA CGVRYKSGRL FPEYRPAASP TFRLDLHSNS  180
HRKVLEMRRG NTNNVLVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18791KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847160.21e-146GATA transcription factor 4
SwissprotO497439e-35GATA4_ARATH; GATA transcription factor 4
SwissprotO826321e-34GATA9_ARATH; GATA transcription factor 9
TrEMBLW1PM361e-144W1PM36_AMBTC; Uncharacterized protein
STRINGERN087411e-145(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-36GATA family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]