PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00017.219 | ||||||||
Common Name | AMTR_s00017p00242860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 199aa MW: 22399.4 Da PI: 9.3151 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.7 | 6.9e-18 | 126 | 159 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C + kTp+WR gp g++tLCnaCG++y++ + evm_27.model.AmTr_v1.0_scaffold00017.219 126 CSHCLVEKTPQWRMGPMGPRTLCNACGVRYKSGR 159 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.5E-16 | 120 | 170 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.688 | 120 | 156 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.66E-15 | 123 | 184 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.3E-14 | 124 | 157 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.28E-14 | 125 | 173 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 126 | 151 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-15 | 126 | 159 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MAYPIVLDMD WVGGSFGIEN ILNFSNEEMA QLCEYDEEAV ERETTQQQQG TTPSPNSAQS 60 SGEPIFPPVE LLQAESGPQK PWRRPRSKRP RPAPRVWTLS PQEIGSPGKG FPAKKWPERE 120 APARRCSHCL VEKTPQWRMG PMGPRTLCNA CGVRYKSGRL FPEYRPAASP TFRLDLHSNS 180 HRKVLEMRRG NTNNVLVN* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 87 | 91 | KRPRP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006847160.2 | 1e-146 | GATA transcription factor 4 | ||||
Swissprot | O49743 | 9e-35 | GATA4_ARATH; GATA transcription factor 4 | ||||
Swissprot | O82632 | 1e-34 | GATA9_ARATH; GATA transcription factor 9 | ||||
TrEMBL | W1PM36 | 1e-144 | W1PM36_AMBTC; Uncharacterized protein | ||||
STRING | ERN08741 | 1e-145 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-36 | GATA family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00017.219 |
Publications ? help Back to Top | |||
---|---|---|---|
|