PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00017.187 | ||||||||
Common Name | AMTR_s00017p00232330, LOC18436843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 372aa MW: 40143 Da PI: 7.2511 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.4e-20 | 181 | 230 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g evm_27.model.AmTr_v1.0_scaffold00017.187 181 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAESAARAYDEAALRFRG 230 7********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.607 | 181 | 238 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 181 | 239 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.5E-37 | 181 | 244 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-14 | 181 | 230 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-33 | 181 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-12 | 182 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.21E-28 | 189 | 240 | No hit | No description |
PRINTS | PR00367 | 7.6E-12 | 204 | 220 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MCTKVAHRKG YSDEWLNFPA PENEEEGEGA APSFGGYTSS QEMSAMVSAL THVVASEGPE 60 LRPEHWYSRQ DLPNFSTSSY LVSSSTSSLV SSSSSSRLKR GREEDQPSGS DSGGLRFYQS 120 CFPGASLGPF RQVSPLVGSE QGSTISHSGG GSSITVSAST IVTSSSSPSS ISEENPERRR 180 RYRGVRQRPW GKWAAEIRDP HKAARVWLGT FDTAESAARA YDEAALRFRG TRAKLNFPEN 240 VQLRPPINPN PSVSLSTIPS LSPLPTSSSY SPYRPDVQGG QSSFSFSHLP HDYIQYSQLL 300 QSHQGLPRPP AQSLLDQCFN VGSSSSGIPA YPQGYPMVRT PVFQYGLPET QSQAPESSSP 360 AAERYPTTSS G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-23 | 180 | 241 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 181 | ERRRRY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006847128.1 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | W1PLT9 | 0.0 | W1PLT9_AMBTC; Uncharacterized protein | ||||
STRING | ERN08709 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 2e-20 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00017.187 |
Entrez Gene | 18436843 |
Publications ? help Back to Top | |||
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