PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00016.65
Common NameAMTR_s00016p00104160, LOC18434342
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 388aa    MW: 42353 Da    PI: 8.4768
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00016.65genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.51.2e-2548139181
                                 trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenln 58 
                                              rWt+qe+l+Li+++r  e+r+++++            + +p+W+++s++++++g+ r+p+qC+++w+nl+
  evm_27.model.AmTr_v1.0_scaffold00016.65  48 RWTRQEILVLIQGKRVAESRVSKKRgrfdpsdsgdgsAPEPKWAAISAYCKRHGVDRGPVQCRKRWSNLA 117
                                              8*******************9986555666666777699******************************* PP

                                 trihelix  59 krykkikegekkrtsessstcpy 81 
                                              ++ykkike+++ + +e +s +++
  evm_27.model.AmTr_v1.0_scaffold00016.65 118 GDYKKIKEWDSAN-PEPESFWSM 139
                                              **********997.444445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-1248133No hitNo description
PROSITE profilePS500906.21448117IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-448116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSSSTPLERL TLGPPSNVQS NGPPPLPLGL GHGDGSESPE NKPPRLPRWT RQEILVLIQG  60
KRVAESRVSK KRGRFDPSDS GDGSAPEPKW AAISAYCKRH GVDRGPVQCR KRWSNLAGDY  120
KKIKEWDSAN PEPESFWSMR NDSRRERKLP GFFDREVFDV LEGRSPSSKP ISRVSEEVSR  180
VSEARVSEIK AEVENGGFDG GRGARVSEKG RSPRILGRGE GGFAGGRSNS RVLERSKGAE  240
VIFDSGRPGN SDEGLFSDFE QSGREEGEEE KDMGAMPESP STPAPPPPII AGIPSEKQPA  300
ANPEKGSSSQ AEHKRRRVSG EEEGSDSPLR DQLLQLLERN SRVLTAQLEA QNLNCQLDRN  360
QRKDHAESLV GVLNKLADAL GRIADKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313317KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844477.10.0trihelix transcription factor ASR3
SwissprotQ8VZ203e-56ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLW1P8E60.0W1P8E6_AMBTC; Uncharacterized protein
STRINGERN061520.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.18e-58Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]