PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00016.247 | ||||||||
Common Name | AMTR_s00016p00238800, LOC18434527 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 32239.4 Da PI: 4.5755 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 41 | 89 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g evm_27.model.AmTr_v1.0_scaffold00016.247 41 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMKG 89 56******.**********965...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.5E-33 | 40 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.56 | 40 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.73E-29 | 40 | 96 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-20 | 41 | 98 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-28 | 41 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-8 | 41 | 52 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-11 | 43 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-8 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDFQNHAYPP PSYSPSSSSS SSASSSQEKR TRRRNQEPGR FLGVRRRPWG RYAAEIRDPS 60 TKERHWLGTF DTAEEAALAY DRAARSMKGL KARTNFMYSD MPHGSSLTSI ISPDDSENLK 120 KSLLMASMIT PANTPFLNQH QNQSSEAPFS FDFLQFQNLN TGFSCSNPAS SGSETSGNLE 180 PQLPTFKTES DGLLSSVLES GSGGVTSQSI SSVQNAMCEE VEFGLWADSY FQSGFSEEIG 240 VDSSMTSSQC MGYNGGYDSF MNSPLLGCMP QVPDTQSCSM PAPTEAIDIG SYLFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 37 | 111 | 11 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006844659.1 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | W1PF40 | 0.0 | W1PF40_AMBTC; Uncharacterized protein | ||||
STRING | ERN06334 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 5e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00016.247 |
Entrez Gene | 18434527 |
Publications ? help Back to Top | |||
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