PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00015.82
Common NameAMTR_s00015p00229650, LOC18437042
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 312aa    MW: 34273.1 Da    PI: 6.3729
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00015.82genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.11.6e-27119178258
                                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                               D y+WrKYGqK++ g+++pr+YYrCt++   gCp++k+v+rs++d ++++itY+g+H++
  evm_27.model.AmTr_v1.0_scaffold00015.82 119 GDRYTWRKYGQKDILGAKYPRGYYRCTHRnsqGCPATKQVQRSDDDRSIFDITYRGKHTC 178
                                              59**************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.538113176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-27114178IPR003657WRKY domain
SMARTSM007741.9E-36118180IPR003657WRKY domain
SuperFamilySSF1182901.22E-23118178IPR003657WRKY domain
PfamPF031063.9E-26120178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEVIGEWERK LLVQELSAGQ EAAKELLSNA ENAVAKEAKV QKILASISNA LLLLRQTDAT  60
DDSPDSGSRS PLSDDSGKSY ARPSKDQDGR EISKKRKTLP KWTERVSVAA ESGCEGSLGD  120
RYTWRKYGQK DILGAKYPRG YYRCTHRNSQ GCPATKQVQR SDDDRSIFDI TYRGKHTCIY  180
STHRNPTNSP KSQPEIVLNF KAGGLNIKTE APEHAEMIGS SPSFSFPCTP TVDSKGIFSP  240
ARSAPENQFS GRGFSPAFVS PATSESNYFA GLGEILSAPN SSTNSPMMDM DLMLHNVEFD  300
PEFQFDASEF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-211191761774Disease resistance protein RRS1
5w3x_D4e-211191761774Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847325.10.0probable WRKY transcription factor 53
TrEMBLW1PMH60.0W1PMH6_AMBTC; Uncharacterized protein
STRINGERN089060.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-42WRKY family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]